Strain Fitness in Pseudomonas simiae WCS417 around PS417_13970

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13965 and PS417_13970 overlap by 4 nucleotidesPS417_13970 and PS417_13975 are separated by 91 nucleotides PS417_13965: PS417_13965 - acetoin utilization protein, at 3,067,775 to 3,068,887 _13965 PS417_13970: PS417_13970 - glycerate kinase, at 3,068,884 to 3,070,026 _13970 PS417_13975: PS417_13975 - CdaR family transcriptional regulator, at 3,070,118 to 3,071,224 _13975 Position (kb) 3068 3069 3070 3071Strain fitness (log2 ratio) -1 0 1at 3068.021 kb on + strand, within PS417_13965at 3068.021 kb on + strand, within PS417_13965at 3068.022 kb on - strand, within PS417_13965at 3068.723 kb on + strand, within PS417_13965at 3068.723 kb on + strand, within PS417_13965at 3068.728 kb on - strand, within PS417_13965at 3068.920 kb on + strandat 3069.026 kb on + strand, within PS417_13970at 3069.026 kb on + strand, within PS417_13970at 3069.026 kb on + strand, within PS417_13970at 3069.026 kb on + strand, within PS417_13970at 3069.026 kb on + strand, within PS417_13970at 3069.026 kb on + strand, within PS417_13970at 3069.027 kb on - strand, within PS417_13970at 3069.027 kb on - strand, within PS417_13970at 3069.027 kb on - strand, within PS417_13970at 3069.027 kb on - strand, within PS417_13970at 3069.200 kb on - strand, within PS417_13970at 3069.693 kb on - strand, within PS417_13970at 3069.731 kb on - strand, within PS417_13970at 3070.099 kb on + strandat 3070.099 kb on + strandat 3070.158 kb on + strandat 3070.223 kb on - strandat 3070.467 kb on + strand, within PS417_13975at 3070.687 kb on + strand, within PS417_13975at 3070.687 kb on + strand, within PS417_13975at 3070.731 kb on + strand, within PS417_13975at 3070.731 kb on + strand, within PS417_13975

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,068,021 + PS417_13965 0.22 -1.7
3,068,021 + PS417_13965 0.22 -1.2
3,068,022 - PS417_13965 0.22 -0.5
3,068,723 + PS417_13965 0.85 -0.3
3,068,723 + PS417_13965 0.85 -0.3
3,068,728 - PS417_13965 0.86 +0.3
3,068,920 + -0.3
3,069,026 + PS417_13970 0.12 +0.4
3,069,026 + PS417_13970 0.12 -0.7
3,069,026 + PS417_13970 0.12 +0.4
3,069,026 + PS417_13970 0.12 +0.4
3,069,026 + PS417_13970 0.12 +0.0
3,069,026 + PS417_13970 0.12 +0.7
3,069,027 - PS417_13970 0.13 -0.0
3,069,027 - PS417_13970 0.13 -0.2
3,069,027 - PS417_13970 0.13 +0.3
3,069,027 - PS417_13970 0.13 +1.0
3,069,200 - PS417_13970 0.28 -0.5
3,069,693 - PS417_13970 0.71 -0.5
3,069,731 - PS417_13970 0.74 -0.6
3,070,099 + +0.2
3,070,099 + +0.9
3,070,158 + -0.0
3,070,223 - -1.1
3,070,467 + PS417_13975 0.32 +0.2
3,070,687 + PS417_13975 0.51 -0.3
3,070,687 + PS417_13975 0.51 -0.1
3,070,731 + PS417_13975 0.55 -0.2
3,070,731 + PS417_13975 0.55 -0.9

Or see this region's nucleotide sequence