Strain Fitness in Pseudomonas simiae WCS417 around PS417_08095

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08090 and PS417_08095 are separated by 177 nucleotidesPS417_08095 and PS417_08100 are separated by 4 nucleotidesPS417_08100 and PS417_08105 are separated by 64 nucleotides PS417_08090: PS417_08090 - 3-oxoacyl-ACP reductase, at 1,769,782 to 1,770,522 _08090 PS417_08095: PS417_08095 - phosphoglycolate phosphatase, at 1,770,700 to 1,771,371 _08095 PS417_08100: PS417_08100 - 3-demethylubiquinone-9 3-methyltransferase, at 1,771,376 to 1,772,074 _08100 PS417_08105: PS417_08105 - N-ethylammeline chlorohydrolase, at 1,772,139 to 1,773,470 _08105 Position (kb) 1770 1771 1772Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1769.714 kb on + strandat 1769.714 kb on + strandat 1769.714 kb on + strandat 1769.714 kb on + strandat 1769.715 kb on - strandat 1769.715 kb on - strandat 1769.715 kb on - strandat 1769.715 kb on - strandat 1769.715 kb on - strandat 1769.761 kb on + strandat 1769.761 kb on + strandat 1769.837 kb on + strandat 1769.837 kb on + strandat 1770.362 kb on + strand, within PS417_08090at 1770.513 kb on - strandat 1770.523 kb on - strandat 1770.527 kb on - strandat 1770.527 kb on - strandat 1770.550 kb on + strandat 1770.612 kb on - strandat 1770.621 kb on + strandat 1770.621 kb on + strandat 1770.621 kb on + strandat 1770.621 kb on + strandat 1770.622 kb on - strandat 1770.622 kb on - strandat 1770.622 kb on - strandat 1770.622 kb on - strandat 1770.701 kb on + strandat 1770.702 kb on - strandat 1770.727 kb on + strandat 1770.855 kb on + strand, within PS417_08095at 1771.139 kb on + strand, within PS417_08095at 1772.086 kb on + strandat 1772.284 kb on + strand, within PS417_08105at 1772.284 kb on + strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.285 kb on - strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.286 kb on + strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.287 kb on - strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strandat 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.288 kb on + strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105at 1772.289 kb on - strand, within PS417_08105

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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1,769,714 + +0.7
1,769,714 + +0.1
1,769,714 + +0.8
1,769,714 + +0.1
1,769,715 - -1.0
1,769,715 - +0.0
1,769,715 - -0.2
1,769,715 - -0.1
1,769,715 - +1.3
1,769,761 + +0.5
1,769,761 + +0.0
1,769,837 + -0.1
1,769,837 + -0.2
1,770,362 + PS417_08090 0.78 +0.4
1,770,513 - -0.1
1,770,523 - +0.1
1,770,527 - -0.8
1,770,527 - -0.1
1,770,550 + -0.2
1,770,612 - +0.1
1,770,621 + -0.4
1,770,621 + -1.1
1,770,621 + -1.7
1,770,621 + +0.2
1,770,622 - +0.5
1,770,622 - -0.2
1,770,622 - -0.0
1,770,622 - -0.0
1,770,701 + -0.2
1,770,702 - -0.0
1,770,727 + +0.5
1,770,855 + PS417_08095 0.23 +0.7
1,771,139 + PS417_08095 0.65 +0.4
1,772,086 + -0.3
1,772,284 + PS417_08105 0.11 +1.0
1,772,284 + PS417_08105 0.11 +0.1
1,772,285 - PS417_08105 0.11 -1.4
1,772,285 - PS417_08105 0.11 -0.5
1,772,285 - PS417_08105 0.11 -0.3
1,772,285 - PS417_08105 0.11 -1.1
1,772,285 - PS417_08105 0.11 -0.1
1,772,285 - PS417_08105 0.11 -0.9
1,772,286 + PS417_08105 0.11 -1.3
1,772,286 + PS417_08105 0.11 +0.3
1,772,286 + PS417_08105 0.11 -0.2
1,772,286 + PS417_08105 0.11 +1.1
1,772,286 + PS417_08105 0.11 -0.4
1,772,286 + PS417_08105 0.11 +0.0
1,772,286 + PS417_08105 0.11 +0.2
1,772,286 + PS417_08105 0.11 -0.4
1,772,286 + PS417_08105 0.11 +0.3
1,772,286 + PS417_08105 0.11 +0.3
1,772,287 - PS417_08105 0.11 -1.1
1,772,287 - PS417_08105 0.11 -0.6
1,772,287 - PS417_08105 0.11 -1.3
1,772,287 - PS417_08105 0.11 -1.7
1,772,287 - PS417_08105 0.11 +0.2
1,772,287 - PS417_08105 0.11 -0.4
1,772,287 - PS417_08105 0.11 -0.1
1,772,287 - PS417_08105 0.11 +0.7
1,772,287 - PS417_08105 0.11 -0.2
1,772,287 - PS417_08105 0.11 -1.3
1,772,287 - PS417_08105 0.11 -0.6
1,772,287 - PS417_08105 0.11 -0.7
1,772,287 - PS417_08105 0.11 -0.1
1,772,287 - PS417_08105 0.11 -0.2
1,772,288 + PS417_08105 0.11 +0.4
1,772,288 + PS417_08105 0.11 +0.4
1,772,288 + PS417_08105 0.11 +0.7
1,772,288 + PS417_08105 0.11 -0.6
1,772,288 + -1.1
1,772,288 + PS417_08105 0.11 +0.3
1,772,288 + PS417_08105 0.11 -1.0
1,772,288 + PS417_08105 0.11 -0.1
1,772,289 - PS417_08105 0.11 -0.7
1,772,289 - PS417_08105 0.11 -3.8
1,772,289 - PS417_08105 0.11 +0.1
1,772,289 - PS417_08105 0.11 -0.4
1,772,289 - PS417_08105 0.11 -0.1
1,772,289 - PS417_08105 0.11 +0.9
1,772,289 - PS417_08105 0.11 -2.1
1,772,289 - PS417_08105 0.11 -1.4
1,772,289 - PS417_08105 0.11 -0.4

Or see this region's nucleotide sequence