Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS15435

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS15430 and RPSI07_RS15435 are separated by 276 nucleotidesRPSI07_RS15435 and RPSI07_RS15440 are separated by 118 nucleotidesRPSI07_RS15440 and RPSI07_RS15445 are separated by 235 nucleotides RPSI07_RS15430: RPSI07_RS15430 - porin, at 1,626,038 to 1,627,087 _RS15430 RPSI07_RS15435: RPSI07_RS15435 - aldo/keto reductase, at 1,627,364 to 1,628,197 _RS15435 RPSI07_RS15440: RPSI07_RS15440 - hypothetical protein, at 1,628,316 to 1,628,729 _RS15440 RPSI07_RS15445: RPSI07_RS15445 - phosphoribosyltransferase, at 1,628,965 to 1,629,915 _RS15445 Position (kb) 1627 1628 1629Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1626.419 kb on + strand, within RPSI07_RS15430at 1626.419 kb on + strand, within RPSI07_RS15430at 1626.419 kb on + strand, within RPSI07_RS15430at 1626.419 kb on + strand, within RPSI07_RS15430at 1626.419 kb on + strand, within RPSI07_RS15430at 1626.419 kb on + strand, within RPSI07_RS15430at 1626.419 kb on + strand, within RPSI07_RS15430at 1626.420 kb on - strand, within RPSI07_RS15430at 1626.420 kb on - strand, within RPSI07_RS15430at 1626.473 kb on + strand, within RPSI07_RS15430at 1626.509 kb on + strand, within RPSI07_RS15430at 1626.509 kb on + strand, within RPSI07_RS15430at 1626.510 kb on - strand, within RPSI07_RS15430at 1626.510 kb on - strand, within RPSI07_RS15430at 1626.611 kb on + strand, within RPSI07_RS15430at 1626.611 kb on + strand, within RPSI07_RS15430at 1626.612 kb on - strand, within RPSI07_RS15430at 1626.612 kb on - strand, within RPSI07_RS15430at 1626.612 kb on - strand, within RPSI07_RS15430at 1626.612 kb on - strand, within RPSI07_RS15430at 1626.612 kb on - strand, within RPSI07_RS15430at 1626.627 kb on + strand, within RPSI07_RS15430at 1626.627 kb on + strand, within RPSI07_RS15430at 1626.627 kb on + strand, within RPSI07_RS15430at 1626.667 kb on + strand, within RPSI07_RS15430at 1626.667 kb on + strand, within RPSI07_RS15430at 1626.667 kb on + strand, within RPSI07_RS15430at 1626.667 kb on + strand, within RPSI07_RS15430at 1626.667 kb on + strand, within RPSI07_RS15430at 1626.668 kb on - strand, within RPSI07_RS15430at 1626.668 kb on - strand, within RPSI07_RS15430at 1626.671 kb on + strand, within RPSI07_RS15430at 1626.671 kb on + strandat 1626.672 kb on - strand, within RPSI07_RS15430at 1626.672 kb on - strand, within RPSI07_RS15430at 1626.672 kb on - strand, within RPSI07_RS15430at 1626.672 kb on - strand, within RPSI07_RS15430at 1626.673 kb on - strand, within RPSI07_RS15430at 1626.674 kb on + strand, within RPSI07_RS15430at 1626.728 kb on + strand, within RPSI07_RS15430at 1626.729 kb on - strand, within RPSI07_RS15430at 1626.729 kb on - strand, within RPSI07_RS15430at 1626.729 kb on - strand, within RPSI07_RS15430at 1626.752 kb on + strand, within RPSI07_RS15430at 1626.761 kb on + strand, within RPSI07_RS15430at 1626.761 kb on + strand, within RPSI07_RS15430at 1626.762 kb on - strand, within RPSI07_RS15430at 1626.809 kb on + strand, within RPSI07_RS15430at 1626.809 kb on + strand, within RPSI07_RS15430at 1626.810 kb on - strand, within RPSI07_RS15430at 1626.810 kb on - strand, within RPSI07_RS15430at 1626.824 kb on + strand, within RPSI07_RS15430at 1626.825 kb on - strand, within RPSI07_RS15430at 1626.825 kb on - strand, within RPSI07_RS15430at 1626.862 kb on + strand, within RPSI07_RS15430at 1626.863 kb on - strand, within RPSI07_RS15430at 1626.866 kb on + strand, within RPSI07_RS15430at 1626.866 kb on + strand, within RPSI07_RS15430at 1626.866 kb on + strand, within RPSI07_RS15430at 1626.867 kb on - strand, within RPSI07_RS15430at 1626.867 kb on - strand, within RPSI07_RS15430at 1626.867 kb on - strand, within RPSI07_RS15430at 1626.867 kb on - strand, within RPSI07_RS15430at 1626.867 kb on - strand, within RPSI07_RS15430at 1626.929 kb on + strand, within RPSI07_RS15430at 1626.929 kb on + strand, within RPSI07_RS15430at 1626.956 kb on + strand, within RPSI07_RS15430at 1626.956 kb on + strand, within RPSI07_RS15430at 1626.956 kb on + strand, within RPSI07_RS15430at 1626.957 kb on - strand, within RPSI07_RS15430at 1626.957 kb on - strand, within RPSI07_RS15430at 1626.957 kb on - strand, within RPSI07_RS15430at 1626.957 kb on - strand, within RPSI07_RS15430at 1626.957 kb on - strand, within RPSI07_RS15430at 1626.957 kb on - strand, within RPSI07_RS15430at 1626.971 kb on + strand, within RPSI07_RS15430at 1627.166 kb on + strandat 1627.167 kb on - strandat 1627.271 kb on + strandat 1627.272 kb on - strandat 1627.272 kb on - strandat 1627.272 kb on - strandat 1627.272 kb on - strandat 1627.292 kb on - strandat 1627.292 kb on - strandat 1627.426 kb on + strandat 1627.427 kb on - strandat 1627.448 kb on + strand, within RPSI07_RS15435at 1627.448 kb on + strand, within RPSI07_RS15435at 1627.448 kb on + strand, within RPSI07_RS15435at 1627.448 kb on + strand, within RPSI07_RS15435at 1627.449 kb on - strand, within RPSI07_RS15435at 1627.449 kb on - strand, within RPSI07_RS15435at 1627.449 kb on - strand, within RPSI07_RS15435at 1627.520 kb on + strand, within RPSI07_RS15435at 1627.521 kb on - strand, within RPSI07_RS15435at 1627.521 kb on - strand, within RPSI07_RS15435at 1627.685 kb on + strand, within RPSI07_RS15435at 1627.686 kb on - strand, within RPSI07_RS15435at 1627.686 kb on - strand, within RPSI07_RS15435at 1627.729 kb on - strand, within RPSI07_RS15435at 1627.772 kb on + strand, within RPSI07_RS15435at 1627.773 kb on - strand, within RPSI07_RS15435at 1627.859 kb on + strand, within RPSI07_RS15435at 1627.860 kb on - strand, within RPSI07_RS15435at 1627.860 kb on - strand, within RPSI07_RS15435at 1627.934 kb on + strand, within RPSI07_RS15435at 1627.935 kb on - strand, within RPSI07_RS15435at 1628.114 kb on + strandat 1628.145 kb on + strandat 1628.195 kb on + strandat 1628.195 kb on + strandat 1628.318 kb on - strandat 1628.318 kb on - strandat 1628.353 kb on + strandat 1628.353 kb on + strandat 1628.354 kb on - strandat 1628.366 kb on - strand, within RPSI07_RS15440at 1628.379 kb on - strand, within RPSI07_RS15440at 1628.461 kb on + strand, within RPSI07_RS15440at 1628.462 kb on - strand, within RPSI07_RS15440at 1628.462 kb on - strand, within RPSI07_RS15440at 1628.590 kb on + strand, within RPSI07_RS15440at 1628.591 kb on - strand, within RPSI07_RS15440at 1628.591 kb on - strand, within RPSI07_RS15440at 1628.591 kb on - strand, within RPSI07_RS15440at 1628.591 kb on - strand, within RPSI07_RS15440at 1628.591 kb on - strand, within RPSI07_RS15440at 1628.591 kb on - strand, within RPSI07_RS15440at 1628.713 kb on + strandat 1628.713 kb on + strandat 1628.714 kb on - strandat 1628.742 kb on + strandat 1628.743 kb on - strandat 1628.743 kb on - strandat 1628.743 kb on - strandat 1628.750 kb on + strandat 1628.750 kb on + strandat 1628.750 kb on + strandat 1628.750 kb on + strandat 1628.751 kb on - strandat 1628.751 kb on - strandat 1628.751 kb on - strandat 1628.751 kb on - strandat 1628.751 kb on - strandat 1628.781 kb on + strandat 1628.796 kb on + strandat 1628.797 kb on - strandat 1628.797 kb on - strandat 1628.797 kb on - strandat 1628.797 kb on - strandat 1628.922 kb on + strandat 1628.923 kb on - strandat 1628.923 kb on - strandat 1629.028 kb on + strandat 1629.057 kb on + strandat 1629.126 kb on + strand, within RPSI07_RS15445at 1629.126 kb on + strand, within RPSI07_RS15445at 1629.146 kb on + strand, within RPSI07_RS15445at 1629.146 kb on + strand, within RPSI07_RS15445at 1629.146 kb on + strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.147 kb on - strand, within RPSI07_RS15445at 1629.158 kb on + strand, within RPSI07_RS15445at 1629.159 kb on - strand, within RPSI07_RS15445at 1629.159 kb on - strand, within RPSI07_RS15445

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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1,626,419 + RPSI07_RS15430 0.36 -1.8
1,626,419 + RPSI07_RS15430 0.36 -0.8
1,626,419 + RPSI07_RS15430 0.36 -1.3
1,626,419 + RPSI07_RS15430 0.36 -1.1
1,626,419 + RPSI07_RS15430 0.36 +0.8
1,626,419 + RPSI07_RS15430 0.36 +0.3
1,626,419 + RPSI07_RS15430 0.36 -0.5
1,626,420 - RPSI07_RS15430 0.36 -0.7
1,626,420 - RPSI07_RS15430 0.36 -0.1
1,626,473 + RPSI07_RS15430 0.41 +0.2
1,626,509 + RPSI07_RS15430 0.45 +1.1
1,626,509 + RPSI07_RS15430 0.45 -0.4
1,626,510 - RPSI07_RS15430 0.45 -0.3
1,626,510 - RPSI07_RS15430 0.45 +2.5
1,626,611 + RPSI07_RS15430 0.55 +0.7
1,626,611 + RPSI07_RS15430 0.55 +0.2
1,626,612 - RPSI07_RS15430 0.55 +0.2
1,626,612 - RPSI07_RS15430 0.55 +0.2
1,626,612 - RPSI07_RS15430 0.55 -2.0
1,626,612 - RPSI07_RS15430 0.55 -0.9
1,626,612 - RPSI07_RS15430 0.55 -0.1
1,626,627 + RPSI07_RS15430 0.56 +3.7
1,626,627 + RPSI07_RS15430 0.56 -4.1
1,626,627 + RPSI07_RS15430 0.56 -0.3
1,626,667 + RPSI07_RS15430 0.60 -0.1
1,626,667 + RPSI07_RS15430 0.60 +2.7
1,626,667 + RPSI07_RS15430 0.60 +0.2
1,626,667 + RPSI07_RS15430 0.60 -0.2
1,626,667 + RPSI07_RS15430 0.60 -0.4
1,626,668 - RPSI07_RS15430 0.60 -1.5
1,626,668 - RPSI07_RS15430 0.60 +3.5
1,626,671 + RPSI07_RS15430 0.60 +0.7
1,626,671 + +0.9
1,626,672 - RPSI07_RS15430 0.60 -0.8
1,626,672 - RPSI07_RS15430 0.60 -0.0
1,626,672 - RPSI07_RS15430 0.60 +1.0
1,626,672 - RPSI07_RS15430 0.60 -0.0
1,626,673 - RPSI07_RS15430 0.60 +0.5
1,626,674 + RPSI07_RS15430 0.61 -1.3
1,626,728 + RPSI07_RS15430 0.66 -0.6
1,626,729 - RPSI07_RS15430 0.66 -0.4
1,626,729 - RPSI07_RS15430 0.66 +1.0
1,626,729 - RPSI07_RS15430 0.66 +2.1
1,626,752 + RPSI07_RS15430 0.68 +0.8
1,626,761 + RPSI07_RS15430 0.69 -0.6
1,626,761 + RPSI07_RS15430 0.69 -0.1
1,626,762 - RPSI07_RS15430 0.69 +0.1
1,626,809 + RPSI07_RS15430 0.73 +0.5
1,626,809 + RPSI07_RS15430 0.73 +2.1
1,626,810 - RPSI07_RS15430 0.74 -1.5
1,626,810 - RPSI07_RS15430 0.74 -1.5
1,626,824 + RPSI07_RS15430 0.75 +0.7
1,626,825 - RPSI07_RS15430 0.75 -0.5
1,626,825 - RPSI07_RS15430 0.75 -1.1
1,626,862 + RPSI07_RS15430 0.78 -3.2
1,626,863 - RPSI07_RS15430 0.79 +1.4
1,626,866 + RPSI07_RS15430 0.79 +1.2
1,626,866 + RPSI07_RS15430 0.79 +0.4
1,626,866 + RPSI07_RS15430 0.79 -0.7
1,626,867 - RPSI07_RS15430 0.79 +0.0
1,626,867 - RPSI07_RS15430 0.79 -0.5
1,626,867 - RPSI07_RS15430 0.79 -1.0
1,626,867 - RPSI07_RS15430 0.79 +1.5
1,626,867 - RPSI07_RS15430 0.79 +0.5
1,626,929 + RPSI07_RS15430 0.85 +0.6
1,626,929 + RPSI07_RS15430 0.85 -0.0
1,626,956 + RPSI07_RS15430 0.87 +0.3
1,626,956 + RPSI07_RS15430 0.87 -1.5
1,626,956 + RPSI07_RS15430 0.87 +1.4
1,626,957 - RPSI07_RS15430 0.88 +0.8
1,626,957 - RPSI07_RS15430 0.88 -0.2
1,626,957 - RPSI07_RS15430 0.88 +0.8
1,626,957 - RPSI07_RS15430 0.88 +0.2
1,626,957 - RPSI07_RS15430 0.88 +0.8
1,626,957 - RPSI07_RS15430 0.88 -0.5
1,626,971 + RPSI07_RS15430 0.89 -0.7
1,627,166 + -0.1
1,627,167 - +0.7
1,627,271 + -0.4
1,627,272 - -1.5
1,627,272 - +0.5
1,627,272 - +1.7
1,627,272 - -0.8
1,627,292 - +0.5
1,627,292 - -0.6
1,627,426 + -1.2
1,627,427 - -0.5
1,627,448 + RPSI07_RS15435 0.10 -0.2
1,627,448 + RPSI07_RS15435 0.10 +0.5
1,627,448 + RPSI07_RS15435 0.10 +0.4
1,627,448 + RPSI07_RS15435 0.10 +0.7
1,627,449 - RPSI07_RS15435 0.10 -0.4
1,627,449 - RPSI07_RS15435 0.10 -1.1
1,627,449 - RPSI07_RS15435 0.10 +1.5
1,627,520 + RPSI07_RS15435 0.19 +0.4
1,627,521 - RPSI07_RS15435 0.19 +1.2
1,627,521 - RPSI07_RS15435 0.19 +0.7
1,627,685 + RPSI07_RS15435 0.38 -0.8
1,627,686 - RPSI07_RS15435 0.39 +0.4
1,627,686 - RPSI07_RS15435 0.39 +0.4
1,627,729 - RPSI07_RS15435 0.44 -0.0
1,627,772 + RPSI07_RS15435 0.49 +1.1
1,627,773 - RPSI07_RS15435 0.49 -0.3
1,627,859 + RPSI07_RS15435 0.59 +0.4
1,627,860 - RPSI07_RS15435 0.59 +0.3
1,627,860 - RPSI07_RS15435 0.59 -0.2
1,627,934 + RPSI07_RS15435 0.68 -0.2
1,627,935 - RPSI07_RS15435 0.68 +0.2
1,628,114 + +2.1
1,628,145 + -0.7
1,628,195 + +0.5
1,628,195 + +2.8
1,628,318 - -0.2
1,628,318 - +0.5
1,628,353 + -1.3
1,628,353 + +1.5
1,628,354 - -0.5
1,628,366 - RPSI07_RS15440 0.12 +0.5
1,628,379 - RPSI07_RS15440 0.15 -0.1
1,628,461 + RPSI07_RS15440 0.35 -1.3
1,628,462 - RPSI07_RS15440 0.35 +0.8
1,628,462 - RPSI07_RS15440 0.35 +0.4
1,628,590 + RPSI07_RS15440 0.66 +0.3
1,628,591 - RPSI07_RS15440 0.66 -0.7
1,628,591 - RPSI07_RS15440 0.66 +1.5
1,628,591 - RPSI07_RS15440 0.66 -0.4
1,628,591 - RPSI07_RS15440 0.66 +0.1
1,628,591 - RPSI07_RS15440 0.66 -0.2
1,628,591 - RPSI07_RS15440 0.66 +1.5
1,628,713 + -0.6
1,628,713 + -2.3
1,628,714 - -0.4
1,628,742 + -0.4
1,628,743 - -0.4
1,628,743 - +0.3
1,628,743 - -0.8
1,628,750 + -0.6
1,628,750 + -1.2
1,628,750 + -0.8
1,628,750 + +0.5
1,628,751 - -2.0
1,628,751 - +0.5
1,628,751 - +1.1
1,628,751 - -0.1
1,628,751 - -1.5
1,628,781 + -0.0
1,628,796 + +1.5
1,628,797 - -0.9
1,628,797 - -1.1
1,628,797 - -0.9
1,628,797 - +0.8
1,628,922 + +0.7
1,628,923 - +0.4
1,628,923 - +1.1
1,629,028 + -1.5
1,629,057 + +0.7
1,629,126 + RPSI07_RS15445 0.17 -0.4
1,629,126 + RPSI07_RS15445 0.17 +0.1
1,629,146 + RPSI07_RS15445 0.19 +0.3
1,629,146 + RPSI07_RS15445 0.19 -2.0
1,629,146 + RPSI07_RS15445 0.19 +0.2
1,629,147 - RPSI07_RS15445 0.19 +0.1
1,629,147 - RPSI07_RS15445 0.19 -0.4
1,629,147 - RPSI07_RS15445 0.19 +0.3
1,629,147 - RPSI07_RS15445 0.19 +2.8
1,629,147 - RPSI07_RS15445 0.19 +0.7
1,629,147 - RPSI07_RS15445 0.19 -0.9
1,629,147 - RPSI07_RS15445 0.19 -0.1
1,629,147 - RPSI07_RS15445 0.19 +0.3
1,629,147 - RPSI07_RS15445 0.19 +0.5
1,629,147 - RPSI07_RS15445 0.19 +1.5
1,629,158 + RPSI07_RS15445 0.20 -0.5
1,629,159 - RPSI07_RS15445 0.20 +0.6
1,629,159 - RPSI07_RS15445 0.20 +0.2

Or see this region's nucleotide sequence