Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS11380

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS11375 and RPSI07_RS11380 are separated by 166 nucleotidesRPSI07_RS11380 and RPSI07_RS11385 are separated by 34 nucleotides RPSI07_RS11375: RPSI07_RS11375 - transcriptional regulator GcvA, at 748,345 to 749,271 _RS11375 RPSI07_RS11380: RPSI07_RS11380 - porin, at 749,438 to 750,499 _RS11380 RPSI07_RS11385: RPSI07_RS11385 - 2-dehydro-3-deoxygalactonokinase, at 750,534 to 751,553 _RS11385 Position (kb) 749 750 751Strain fitness (log2 ratio) -2 -1 0 1 2 3at 748.472 kb on + strand, within RPSI07_RS11375at 748.473 kb on - strand, within RPSI07_RS11375at 748.473 kb on - strand, within RPSI07_RS11375at 748.475 kb on + strand, within RPSI07_RS11375at 748.475 kb on + strand, within RPSI07_RS11375at 748.475 kb on + strand, within RPSI07_RS11375at 748.537 kb on + strand, within RPSI07_RS11375at 748.538 kb on + strand, within RPSI07_RS11375at 748.538 kb on + strand, within RPSI07_RS11375at 748.538 kb on + strand, within RPSI07_RS11375at 748.538 kb on + strand, within RPSI07_RS11375at 748.539 kb on - strand, within RPSI07_RS11375at 748.934 kb on + strand, within RPSI07_RS11375at 748.935 kb on - strand, within RPSI07_RS11375at 748.975 kb on + strand, within RPSI07_RS11375at 749.066 kb on + strand, within RPSI07_RS11375at 749.066 kb on + strand, within RPSI07_RS11375at 749.067 kb on - strand, within RPSI07_RS11375at 749.067 kb on - strand, within RPSI07_RS11375at 749.067 kb on - strand, within RPSI07_RS11375at 749.067 kb on - strand, within RPSI07_RS11375at 749.067 kb on - strand, within RPSI07_RS11375at 749.067 kb on - strand, within RPSI07_RS11375at 749.067 kb on - strand, within RPSI07_RS11375at 749.308 kb on + strandat 749.308 kb on + strandat 749.309 kb on - strandat 749.309 kb on - strandat 749.309 kb on - strandat 749.342 kb on + strandat 749.343 kb on - strandat 749.415 kb on + strandat 749.415 kb on + strandat 749.416 kb on - strandat 749.518 kb on + strandat 749.561 kb on + strand, within RPSI07_RS11380at 749.561 kb on + strand, within RPSI07_RS11380at 749.562 kb on - strand, within RPSI07_RS11380at 749.925 kb on - strand, within RPSI07_RS11380at 749.925 kb on - strand, within RPSI07_RS11380at 750.029 kb on + strand, within RPSI07_RS11380at 750.063 kb on - strand, within RPSI07_RS11380at 750.063 kb on - strand, within RPSI07_RS11380at 750.063 kb on - strand, within RPSI07_RS11380at 750.063 kb on - strand, within RPSI07_RS11380at 750.063 kb on - strand, within RPSI07_RS11380at 750.063 kb on - strand, within RPSI07_RS11380at 750.092 kb on + strand, within RPSI07_RS11380at 750.092 kb on + strand, within RPSI07_RS11380at 750.105 kb on - strand, within RPSI07_RS11380at 750.164 kb on + strand, within RPSI07_RS11380at 750.164 kb on + strand, within RPSI07_RS11380at 750.164 kb on + strand, within RPSI07_RS11380at 750.165 kb on - strand, within RPSI07_RS11380at 750.165 kb on - strand, within RPSI07_RS11380at 750.230 kb on + strand, within RPSI07_RS11380at 750.230 kb on + strand, within RPSI07_RS11380at 750.248 kb on + strand, within RPSI07_RS11380at 750.248 kb on + strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.249 kb on - strand, within RPSI07_RS11380at 750.322 kb on + strand, within RPSI07_RS11380at 750.322 kb on + strand, within RPSI07_RS11380at 750.348 kb on - strand, within RPSI07_RS11380at 750.348 kb on - strand, within RPSI07_RS11380at 750.348 kb on - strand, within RPSI07_RS11380at 750.374 kb on + strand, within RPSI07_RS11380at 750.374 kb on + strand, within RPSI07_RS11380at 750.375 kb on - strand, within RPSI07_RS11380at 750.375 kb on - strand, within RPSI07_RS11380at 750.383 kb on + strand, within RPSI07_RS11380at 750.474 kb on - strandat 751.264 kb on - strand, within RPSI07_RS11385at 751.264 kb on - strand, within RPSI07_RS11385

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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748,472 + RPSI07_RS11375 0.14 +2.9
748,473 - RPSI07_RS11375 0.14 +2.2
748,473 - RPSI07_RS11375 0.14 +0.6
748,475 + RPSI07_RS11375 0.14 -0.7
748,475 + RPSI07_RS11375 0.14 -0.1
748,475 + RPSI07_RS11375 0.14 +1.6
748,537 + RPSI07_RS11375 0.21 +0.6
748,538 + RPSI07_RS11375 0.21 +0.4
748,538 + RPSI07_RS11375 0.21 -0.7
748,538 + RPSI07_RS11375 0.21 +0.2
748,538 + RPSI07_RS11375 0.21 +0.1
748,539 - RPSI07_RS11375 0.21 -0.0
748,934 + RPSI07_RS11375 0.64 +3.6
748,935 - RPSI07_RS11375 0.64 +0.3
748,975 + RPSI07_RS11375 0.68 +0.6
749,066 + RPSI07_RS11375 0.78 -0.4
749,066 + RPSI07_RS11375 0.78 +0.6
749,067 - RPSI07_RS11375 0.78 +0.2
749,067 - RPSI07_RS11375 0.78 +0.0
749,067 - RPSI07_RS11375 0.78 -0.1
749,067 - RPSI07_RS11375 0.78 -0.1
749,067 - RPSI07_RS11375 0.78 +1.6
749,067 - RPSI07_RS11375 0.78 -0.1
749,067 - RPSI07_RS11375 0.78 +0.2
749,308 + +2.2
749,308 + -0.1
749,309 - -0.2
749,309 - +1.2
749,309 - -0.5
749,342 + -1.0
749,343 - -1.2
749,415 + +0.0
749,415 + +1.4
749,416 - -0.4
749,518 + -1.4
749,561 + RPSI07_RS11380 0.12 +1.8
749,561 + RPSI07_RS11380 0.12 +1.9
749,562 - RPSI07_RS11380 0.12 -0.1
749,925 - RPSI07_RS11380 0.46 +0.1
749,925 - RPSI07_RS11380 0.46 +0.5
750,029 + RPSI07_RS11380 0.56 -2.0
750,063 - RPSI07_RS11380 0.59 +0.7
750,063 - RPSI07_RS11380 0.59 +0.2
750,063 - RPSI07_RS11380 0.59 +0.6
750,063 - RPSI07_RS11380 0.59 +1.6
750,063 - RPSI07_RS11380 0.59 -2.5
750,063 - RPSI07_RS11380 0.59 -0.1
750,092 + RPSI07_RS11380 0.62 +2.2
750,092 + RPSI07_RS11380 0.62 -1.0
750,105 - RPSI07_RS11380 0.63 +0.3
750,164 + RPSI07_RS11380 0.68 +0.6
750,164 + RPSI07_RS11380 0.68 +0.6
750,164 + RPSI07_RS11380 0.68 -0.8
750,165 - RPSI07_RS11380 0.68 +0.6
750,165 - RPSI07_RS11380 0.68 +1.6
750,230 + RPSI07_RS11380 0.75 +0.6
750,230 + RPSI07_RS11380 0.75 -0.8
750,248 + RPSI07_RS11380 0.76 +2.2
750,248 + RPSI07_RS11380 0.76 +0.9
750,249 - RPSI07_RS11380 0.76 +2.0
750,249 - RPSI07_RS11380 0.76 +0.1
750,249 - RPSI07_RS11380 0.76 -0.9
750,249 - RPSI07_RS11380 0.76 +1.1
750,249 - RPSI07_RS11380 0.76 +0.6
750,249 - RPSI07_RS11380 0.76 +2.6
750,249 - RPSI07_RS11380 0.76 +1.6
750,249 - RPSI07_RS11380 0.76 +1.6
750,249 - RPSI07_RS11380 0.76 +0.4
750,249 - RPSI07_RS11380 0.76 +2.8
750,322 + RPSI07_RS11380 0.83 -0.9
750,322 + RPSI07_RS11380 0.83 +0.1
750,348 - RPSI07_RS11380 0.86 -0.8
750,348 - RPSI07_RS11380 0.86 -0.5
750,348 - RPSI07_RS11380 0.86 +0.8
750,374 + RPSI07_RS11380 0.88 -0.6
750,374 + RPSI07_RS11380 0.88 -0.5
750,375 - RPSI07_RS11380 0.88 +0.6
750,375 - RPSI07_RS11380 0.88 -1.5
750,383 + RPSI07_RS11380 0.89 +0.1
750,474 - -1.1
751,264 - RPSI07_RS11385 0.72 +0.2
751,264 - RPSI07_RS11385 0.72 +1.9

Or see this region's nucleotide sequence