Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS03315 and RPSI07_RS03320 are separated by 123 nucleotides RPSI07_RS03320 and RPSI07_RS03325 are separated by 169 nucleotides RPSI07_RS03325 and RPSI07_RS03330 are separated by 7 nucleotides
RPSI07_RS03315: RPSI07_RS03315 - elongation factor G, at 905,265 to 907,367
_RS03315
RPSI07_RS03320: RPSI07_RS03320 - Crp/Fnr family transcriptional regulator, at 907,491 to 908,210
_RS03320
RPSI07_RS03325: RPSI07_RS03325 - DUF962 domain-containing protein, at 908,380 to 908,913
_RS03325
RPSI07_RS03330: RPSI07_RS03330 - ferredoxin family protein, at 908,921 to 909,259
_RS03330
Position (kb) 907
908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 906.514 kb on + strand, within RPSI07_RS03315 at 906.514 kb on + strand, within RPSI07_RS03315 at 906.543 kb on + strand, within RPSI07_RS03315 at 906.544 kb on - strand, within RPSI07_RS03315 at 906.544 kb on - strand, within RPSI07_RS03315 at 906.544 kb on - strand, within RPSI07_RS03315 at 906.658 kb on + strand, within RPSI07_RS03315 at 906.658 kb on + strand, within RPSI07_RS03315 at 906.758 kb on - strand, within RPSI07_RS03315 at 906.758 kb on - strand, within RPSI07_RS03315 at 906.970 kb on + strand, within RPSI07_RS03315 at 906.971 kb on - strand, within RPSI07_RS03315 at 906.971 kb on - strand, within RPSI07_RS03315 at 906.971 kb on - strand, within RPSI07_RS03315 at 906.971 kb on - strand, within RPSI07_RS03315 at 906.971 kb on - strand, within RPSI07_RS03315 at 906.971 kb on - strand, within RPSI07_RS03315 at 907.030 kb on + strand, within RPSI07_RS03315 at 907.030 kb on + strand, within RPSI07_RS03315 at 907.030 kb on + strand, within RPSI07_RS03315 at 907.030 kb on + strand, within RPSI07_RS03315 at 907.031 kb on - strand, within RPSI07_RS03315 at 907.031 kb on - strand, within RPSI07_RS03315 at 907.031 kb on - strand, within RPSI07_RS03315 at 907.130 kb on + strand, within RPSI07_RS03315 at 907.132 kb on + strand, within RPSI07_RS03315 at 907.270 kb on + strand at 907.301 kb on + strand at 907.301 kb on + strand at 907.302 kb on - strand at 907.443 kb on + strand at 907.444 kb on - strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.445 kb on + strand at 907.446 kb on - strand at 907.446 kb on - strand at 907.446 kb on - strand at 907.446 kb on - strand at 907.447 kb on - strand at 907.466 kb on + strand at 907.467 kb on + strand at 907.467 kb on + strand at 907.467 kb on + strand at 907.467 kb on + strand at 907.468 kb on - strand at 907.471 kb on + strand at 907.472 kb on - strand at 907.546 kb on + strand at 908.023 kb on + strand, within RPSI07_RS03320 at 908.024 kb on - strand, within RPSI07_RS03320 at 908.024 kb on - strand, within RPSI07_RS03320 at 908.164 kb on + strand at 908.241 kb on - strand at 908.241 kb on - strand at 908.306 kb on + strand at 908.306 kb on + strand at 908.306 kb on + strand at 908.307 kb on - strand at 908.307 kb on - strand at 908.323 kb on - strand at 908.411 kb on - strand at 908.419 kb on + strand at 908.419 kb on + strand at 908.420 kb on - strand at 908.578 kb on + strand, within RPSI07_RS03325 at 908.578 kb on + strand, within RPSI07_RS03325 at 908.579 kb on - strand, within RPSI07_RS03325 at 908.579 kb on - strand, within RPSI07_RS03325 at 908.579 kb on - strand, within RPSI07_RS03325 at 908.579 kb on - strand, within RPSI07_RS03325 at 908.579 kb on - strand, within RPSI07_RS03325 at 908.579 kb on - strand, within RPSI07_RS03325 at 908.737 kb on + strand, within RPSI07_RS03325 at 908.737 kb on + strand, within RPSI07_RS03325 at 908.738 kb on - strand at 908.738 kb on - strand, within RPSI07_RS03325 at 908.738 kb on - strand, within RPSI07_RS03325 at 908.738 kb on - strand, within RPSI07_RS03325 at 908.740 kb on + strand, within RPSI07_RS03325 at 908.740 kb on + strand, within RPSI07_RS03325 at 908.741 kb on - strand, within RPSI07_RS03325 at 908.741 kb on - strand, within RPSI07_RS03325 at 908.741 kb on - strand, within RPSI07_RS03325 at 908.741 kb on - strand, within RPSI07_RS03325 at 908.741 kb on - strand, within RPSI07_RS03325
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days remove 906,514 + RPSI07_RS03315 0.59 -1.1 906,514 + RPSI07_RS03315 0.59 -1.8 906,543 + RPSI07_RS03315 0.61 +0.8 906,544 - RPSI07_RS03315 0.61 -0.8 906,544 - RPSI07_RS03315 0.61 -1.1 906,544 - RPSI07_RS03315 0.61 -1.8 906,658 + RPSI07_RS03315 0.66 -1.2 906,658 + RPSI07_RS03315 0.66 -1.5 906,758 - RPSI07_RS03315 0.71 +0.6 906,758 - RPSI07_RS03315 0.71 -1.4 906,970 + RPSI07_RS03315 0.81 -1.2 906,971 - RPSI07_RS03315 0.81 -0.8 906,971 - RPSI07_RS03315 0.81 -1.4 906,971 - RPSI07_RS03315 0.81 -1.8 906,971 - RPSI07_RS03315 0.81 -2.9 906,971 - RPSI07_RS03315 0.81 -1.1 906,971 - RPSI07_RS03315 0.81 -1.3 907,030 + RPSI07_RS03315 0.84 -1.2 907,030 + RPSI07_RS03315 0.84 -1.5 907,030 + RPSI07_RS03315 0.84 -0.1 907,030 + RPSI07_RS03315 0.84 -1.2 907,031 - RPSI07_RS03315 0.84 -1.2 907,031 - RPSI07_RS03315 0.84 -1.8 907,031 - RPSI07_RS03315 0.84 -0.7 907,130 + RPSI07_RS03315 0.89 -1.3 907,132 + RPSI07_RS03315 0.89 -2.0 907,270 + -2.2 907,301 + -0.9 907,301 + -1.2 907,302 - -0.8 907,443 + -0.2 907,444 - -1.0 907,445 + -0.5 907,445 + -0.6 907,445 + +0.5 907,445 + +0.7 907,445 + +1.8 907,445 + -0.1 907,445 + +0.1 907,445 + -0.5 907,445 + +0.2 907,445 + +0.2 907,445 + +0.9 907,445 + +0.3 907,445 + -0.6 907,445 + -0.2 907,446 - -0.7 907,446 - +2.2 907,446 - -0.6 907,446 - +1.0 907,447 - -0.0 907,466 + +0.3 907,467 + +1.0 907,467 + -0.6 907,467 + -0.3 907,467 + -0.1 907,468 - -0.6 907,471 + +0.2 907,472 - -0.2 907,546 + -0.4 908,023 + RPSI07_RS03320 0.74 -0.6 908,024 - RPSI07_RS03320 0.74 -0.4 908,024 - RPSI07_RS03320 0.74 +0.8 908,164 + +0.7 908,241 - +1.2 908,241 - -0.6 908,306 + -1.1 908,306 + +0.2 908,306 + +0.8 908,307 - -1.9 908,307 - +2.4 908,323 - +0.1 908,411 - +1.8 908,419 + -0.9 908,419 + +0.1 908,420 - +0.7 908,578 + RPSI07_RS03325 0.37 -0.4 908,578 + RPSI07_RS03325 0.37 +0.8 908,579 - RPSI07_RS03325 0.37 -0.8 908,579 - RPSI07_RS03325 0.37 -0.3 908,579 - RPSI07_RS03325 0.37 -0.7 908,579 - RPSI07_RS03325 0.37 +0.8 908,579 - RPSI07_RS03325 0.37 +0.2 908,579 - RPSI07_RS03325 0.37 +0.1 908,737 + RPSI07_RS03325 0.67 -1.3 908,737 + RPSI07_RS03325 0.67 -1.0 908,738 - +0.8 908,738 - RPSI07_RS03325 0.67 -0.6 908,738 - RPSI07_RS03325 0.67 +1.1 908,738 - RPSI07_RS03325 0.67 -1.8 908,740 + RPSI07_RS03325 0.67 -0.4 908,740 + RPSI07_RS03325 0.67 -1.9 908,741 - RPSI07_RS03325 0.68 -0.5 908,741 - RPSI07_RS03325 0.68 +0.2 908,741 - RPSI07_RS03325 0.68 -0.8 908,741 - RPSI07_RS03325 0.68 -0.8 908,741 - RPSI07_RS03325 0.68 -0.5
Or see this region's nucleotide sequence