Strain Fitness in Agrobacterium fabrum C58 around Atu1382

Experiment: R2A with Ticarcillin 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1381 and Atu1382 are separated by 49 nucleotidesAtu1382 and Atu1383 overlap by 8 nucleotidesAtu1383 and Atu1384 overlap by 1 nucleotides Atu1381: Atu1381 - group 1 outer membrane protein precursor, at 1,374,514 to 1,376,838 Atu1381 Atu1382: Atu1382 - UDP glucosamine N-acyltransferase, at 1,376,888 to 1,377,955 Atu1382 Atu1383: Atu1383 - (3R)-Hydroxymyristoyl-(acyl carrier protein)- Dehydratase, at 1,377,948 to 1,378,412 Atu1383 Atu1384: Atu1384 - acyl-(acyl carrier protein)--UDP-N-acetylglucosamine O-acyltransferase, at 1,378,412 to 1,379,227 Atu1384 Position (kb) 1376 1377 1378Strain fitness (log2 ratio) -1 0 1at 1376.869 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Ticarcillin 0.01 mM
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1,376,869 + -0.3

Or see this region's nucleotide sequence