Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10325 and RPSI07_RS10330 are separated by 155 nucleotides RPSI07_RS10330 and RPSI07_RS10335 are separated by 234 nucleotides
RPSI07_RS10325: RPSI07_RS10325 - glutamate synthase subunit beta, at 526,388 to 527,851
_RS10325
RPSI07_RS10330: RPSI07_RS10330 - tripartite tricarboxylate transporter substrate binding protein, at 528,007 to 529,041
_RS10330
RPSI07_RS10335: RPSI07_RS10335 - ABC transporter ATP-binding protein, at 529,276 to 530,115
_RS10335
Position (kb) 528
529
530 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 527.192 kb on + strand, within RPSI07_RS10325 at 527.708 kb on + strand at 527.928 kb on + strand at 527.928 kb on + strand at 527.928 kb on + strand at 527.929 kb on - strand at 527.929 kb on - strand at 527.929 kb on - strand at 527.929 kb on - strand at 527.929 kb on - strand at 527.929 kb on - strand at 527.943 kb on + strand at 527.943 kb on + strand at 527.943 kb on + strand at 527.943 kb on + strand at 527.944 kb on - strand at 527.974 kb on + strand at 527.974 kb on + strand at 527.974 kb on + strand at 527.974 kb on + strand at 527.974 kb on + strand at 527.975 kb on - strand at 527.975 kb on - strand at 527.975 kb on - strand at 527.975 kb on - strand at 527.975 kb on - strand at 528.044 kb on - strand at 528.044 kb on - strand at 528.142 kb on + strand, within RPSI07_RS10330 at 528.385 kb on + strand, within RPSI07_RS10330 at 528.677 kb on - strand, within RPSI07_RS10330 at 528.677 kb on - strand, within RPSI07_RS10330 at 529.141 kb on - strand at 529.141 kb on - strand at 529.182 kb on + strand at 529.182 kb on + strand at 529.183 kb on - strand at 529.219 kb on + strand at 529.220 kb on - strand at 529.787 kb on - strand, within RPSI07_RS10335 at 529.930 kb on + strand, within RPSI07_RS10335 at 529.931 kb on - strand, within RPSI07_RS10335
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 527,192 + RPSI07_RS10325 0.55 +0.8 527,708 + -0.2 527,928 + -0.6 527,928 + -0.4 527,928 + -1.1 527,929 - -2.0 527,929 - -0.7 527,929 - -1.8 527,929 - -1.8 527,929 - -0.3 527,929 - -0.2 527,943 + +1.8 527,943 + +0.2 527,943 + +0.7 527,943 + -0.6 527,944 - +0.6 527,974 + -0.6 527,974 + -0.2 527,974 + +0.2 527,974 + -2.0 527,974 + -0.9 527,975 - -0.2 527,975 - +0.6 527,975 - -0.8 527,975 - +0.8 527,975 - +2.8 528,044 - +1.5 528,044 - +0.7 528,142 + RPSI07_RS10330 0.13 +1.8 528,385 + RPSI07_RS10330 0.37 +0.8 528,677 - RPSI07_RS10330 0.65 +0.4 528,677 - RPSI07_RS10330 0.65 +1.1 529,141 - +0.8 529,141 - -2.2 529,182 + +0.1 529,182 + -0.8 529,183 - +0.8 529,219 + -0.7 529,220 - -1.2 529,787 - RPSI07_RS10335 0.61 +0.8 529,930 + RPSI07_RS10335 0.78 +0.8 529,931 - RPSI07_RS10335 0.78 +1.8
Or see this region's nucleotide sequence