Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS09815 and RPSI07_RS09820 are separated by 173 nucleotides RPSI07_RS09820 and RPSI07_RS09825 are separated by 120 nucleotides
RPSI07_RS09815: RPSI07_RS09815 - MFS transporter, at 421,179 to 422,477
_RS09815
RPSI07_RS09820: RPSI07_RS09820 - hypothetical protein, at 422,651 to 422,860
_RS09820
RPSI07_RS09825: RPSI07_RS09825 - MFS transporter, at 422,981 to 424,270
_RS09825
Position (kb) 422
423 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 421.723 kb on + strand, within RPSI07_RS09815 at 422.161 kb on + strand, within RPSI07_RS09815 at 422.162 kb on - strand, within RPSI07_RS09815 at 422.162 kb on - strand, within RPSI07_RS09815 at 422.377 kb on + strand at 422.377 kb on + strand at 422.377 kb on + strand at 422.378 kb on - strand at 422.378 kb on - strand at 422.378 kb on - strand at 422.386 kb on + strand at 422.387 kb on - strand at 422.401 kb on + strand at 422.401 kb on + strand at 422.401 kb on + strand at 422.401 kb on + strand at 422.402 kb on - strand at 422.471 kb on + strand at 422.503 kb on + strand at 422.503 kb on + strand at 422.503 kb on + strand at 422.503 kb on + strand at 422.504 kb on - strand at 422.504 kb on - strand at 422.504 kb on - strand at 422.547 kb on + strand at 422.548 kb on - strand at 422.762 kb on + strand, within RPSI07_RS09820 at 422.763 kb on + strand, within RPSI07_RS09820 at 423.162 kb on + strand, within RPSI07_RS09825 at 423.235 kb on + strand, within RPSI07_RS09825 at 423.236 kb on - strand, within RPSI07_RS09825 at 423.237 kb on + strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.501 kb on + strand, within RPSI07_RS09825 at 423.516 kb on + strand, within RPSI07_RS09825
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 421,723 + RPSI07_RS09815 0.42 -0.8 422,161 + RPSI07_RS09815 0.76 +3.1 422,162 - RPSI07_RS09815 0.76 -0.7 422,162 - RPSI07_RS09815 0.76 +0.6 422,377 + -0.3 422,377 + +0.7 422,377 + -0.3 422,378 - -0.7 422,378 - +1.0 422,378 - +1.7 422,386 + -0.0 422,387 - +0.2 422,401 + +1.3 422,401 + -0.3 422,401 + -0.4 422,401 + -0.3 422,402 - -2.3 422,471 + +0.7 422,503 + -0.6 422,503 + -0.3 422,503 + +0.1 422,503 + -2.6 422,504 - +0.7 422,504 - -0.2 422,504 - -0.2 422,547 + -2.1 422,548 - +1.0 422,762 + RPSI07_RS09820 0.53 +1.7 422,763 + RPSI07_RS09820 0.53 -1.3 423,162 + RPSI07_RS09825 0.14 +0.1 423,235 + RPSI07_RS09825 0.20 -0.1 423,236 - RPSI07_RS09825 0.20 +4.1 423,237 + RPSI07_RS09825 0.20 -0.1 423,238 - RPSI07_RS09825 0.20 -0.6 423,238 - RPSI07_RS09825 0.20 -0.4 423,238 - RPSI07_RS09825 0.20 +1.7 423,238 - RPSI07_RS09825 0.20 -1.6 423,238 - RPSI07_RS09825 0.20 -0.8 423,501 + RPSI07_RS09825 0.40 -0.5 423,516 + RPSI07_RS09825 0.41 +0.2
Or see this region's nucleotide sequence