Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06765

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS06755 and RPSI07_RS06760 are separated by 56 nucleotidesRPSI07_RS06760 and RPSI07_RS06765 overlap by 11 nucleotidesRPSI07_RS06765 and RPSI07_RS06770 are separated by 50 nucleotides RPSI07_RS06755: RPSI07_RS06755 - GntR family transcriptional regulator, at 1,812,239 to 1,812,961 _RS06755 RPSI07_RS06760: RPSI07_RS06760 - ABC transporter ATP-binding protein, at 1,813,018 to 1,813,803 _RS06760 RPSI07_RS06765: RPSI07_RS06765 - ABC transporter permease, at 1,813,793 to 1,814,689 _RS06765 RPSI07_RS06770: RPSI07_RS06770 - ABC transporter substrate-binding protein, at 1,814,740 to 1,815,792 _RS06770 Position (kb) 1813 1814 1815Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1812.818 kb on + strand, within RPSI07_RS06755at 1812.818 kb on + strand, within RPSI07_RS06755at 1812.818 kb on + strand, within RPSI07_RS06755at 1812.819 kb on - strand, within RPSI07_RS06755at 1812.819 kb on - strand, within RPSI07_RS06755at 1812.884 kb on + strand, within RPSI07_RS06755at 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.954 kb on + strandat 1812.955 kb on - strandat 1812.955 kb on - strandat 1812.955 kb on - strandat 1812.955 kb on - strandat 1812.955 kb on - strandat 1812.955 kb on - strandat 1812.955 kb on - strandat 1812.955 kb on - strandat 1812.956 kb on - strandat 1812.960 kb on - strandat 1813.069 kb on + strandat 1813.069 kb on + strandat 1813.069 kb on + strandat 1813.069 kb on + strandat 1813.069 kb on + strandat 1813.069 kb on + strandat 1813.070 kb on - strandat 1813.070 kb on - strandat 1813.070 kb on - strandat 1813.070 kb on - strandat 1813.070 kb on - strandat 1813.102 kb on + strand, within RPSI07_RS06760at 1813.102 kb on + strand, within RPSI07_RS06760at 1813.102 kb on + strand, within RPSI07_RS06760at 1813.103 kb on - strand, within RPSI07_RS06760at 1813.103 kb on - strand, within RPSI07_RS06760at 1813.103 kb on - strand, within RPSI07_RS06760at 1813.123 kb on + strand, within RPSI07_RS06760at 1813.199 kb on - strand, within RPSI07_RS06760at 1813.199 kb on - strand, within RPSI07_RS06760at 1813.854 kb on - strandat 1813.923 kb on - strand, within RPSI07_RS06765at 1813.923 kb on - strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.382 kb on - strand, within RPSI07_RS06765at 1814.382 kb on - strand, within RPSI07_RS06765at 1814.382 kb on - strand, within RPSI07_RS06765at 1814.382 kb on - strand, within RPSI07_RS06765at 1814.402 kb on + strand, within RPSI07_RS06765at 1814.402 kb on + strand, within RPSI07_RS06765at 1814.402 kb on + strand, within RPSI07_RS06765at 1814.403 kb on - strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.544 kb on - strand, within RPSI07_RS06765at 1814.544 kb on - strand, within RPSI07_RS06765at 1814.544 kb on - strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.888 kb on - strand, within RPSI07_RS06770at 1814.888 kb on - strand, within RPSI07_RS06770at 1814.888 kb on - strand, within RPSI07_RS06770at 1814.983 kb on + strand, within RPSI07_RS06770at 1814.983 kb on + strand, within RPSI07_RS06770at 1815.145 kb on + strand, within RPSI07_RS06770at 1815.146 kb on - strand, within RPSI07_RS06770at 1815.146 kb on - strand, within RPSI07_RS06770at 1815.397 kb on + strand, within RPSI07_RS06770at 1815.397 kb on + strand, within RPSI07_RS06770at 1815.479 kb on - strand, within RPSI07_RS06770at 1815.479 kb on - strand, within RPSI07_RS06770at 1815.496 kb on + strand, within RPSI07_RS06770at 1815.496 kb on + strand, within RPSI07_RS06770at 1815.592 kb on + strand, within RPSI07_RS06770at 1815.592 kb on + strand, within RPSI07_RS06770at 1815.592 kb on + strand, within RPSI07_RS06770at 1815.592 kb on + strand, within RPSI07_RS06770at 1815.593 kb on - strand, within RPSI07_RS06770at 1815.593 kb on - strand, within RPSI07_RS06770at 1815.593 kb on - strand, within RPSI07_RS06770at 1815.593 kb on - strand, within RPSI07_RS06770

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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1,812,818 + RPSI07_RS06755 0.80 +1.3
1,812,818 + RPSI07_RS06755 0.80 +0.9
1,812,818 + RPSI07_RS06755 0.80 +0.8
1,812,819 - RPSI07_RS06755 0.80 +0.8
1,812,819 - RPSI07_RS06755 0.80 +0.4
1,812,884 + RPSI07_RS06755 0.89 -1.6
1,812,954 + +0.4
1,812,954 + +0.3
1,812,954 + -0.8
1,812,954 + -1.0
1,812,954 + -1.6
1,812,954 + -1.5
1,812,954 + +0.4
1,812,954 + -2.2
1,812,954 + -0.4
1,812,954 + +0.8
1,812,954 + -0.8
1,812,954 + -0.2
1,812,954 + +0.2
1,812,954 + -1.6
1,812,954 + +0.8
1,812,955 - -0.4
1,812,955 - +0.0
1,812,955 - -1.2
1,812,955 - +0.3
1,812,955 - -0.4
1,812,955 - +0.8
1,812,955 - +1.4
1,812,955 - -0.8
1,812,956 - -0.2
1,812,960 - -0.0
1,813,069 + +0.1
1,813,069 + -0.6
1,813,069 + -1.1
1,813,069 + +1.3
1,813,069 + +0.8
1,813,069 + -0.7
1,813,070 - -0.7
1,813,070 - +0.6
1,813,070 - +1.4
1,813,070 - +0.2
1,813,070 - -0.8
1,813,102 + RPSI07_RS06760 0.11 -1.0
1,813,102 + RPSI07_RS06760 0.11 +0.2
1,813,102 + RPSI07_RS06760 0.11 -0.1
1,813,103 - RPSI07_RS06760 0.11 -0.9
1,813,103 - RPSI07_RS06760 0.11 -1.0
1,813,103 - RPSI07_RS06760 0.11 -2.9
1,813,123 + RPSI07_RS06760 0.13 -0.5
1,813,199 - RPSI07_RS06760 0.23 +0.8
1,813,199 - RPSI07_RS06760 0.23 +0.3
1,813,854 - -0.3
1,813,923 - RPSI07_RS06765 0.14 -1.9
1,813,923 - RPSI07_RS06765 0.14 -0.2
1,814,381 + RPSI07_RS06765 0.66 -0.7
1,814,381 + RPSI07_RS06765 0.66 +0.2
1,814,381 + RPSI07_RS06765 0.66 -0.2
1,814,381 + RPSI07_RS06765 0.66 -2.3
1,814,381 + RPSI07_RS06765 0.66 +0.1
1,814,381 + RPSI07_RS06765 0.66 -0.9
1,814,382 - RPSI07_RS06765 0.66 -0.8
1,814,382 - RPSI07_RS06765 0.66 -1.2
1,814,382 - RPSI07_RS06765 0.66 -0.1
1,814,382 - RPSI07_RS06765 0.66 +0.3
1,814,402 + RPSI07_RS06765 0.68 -0.6
1,814,402 + RPSI07_RS06765 0.68 +0.8
1,814,402 + RPSI07_RS06765 0.68 -1.6
1,814,403 - RPSI07_RS06765 0.68 -0.1
1,814,543 + RPSI07_RS06765 0.84 -0.6
1,814,543 + RPSI07_RS06765 0.84 -0.1
1,814,543 + RPSI07_RS06765 0.84 -0.6
1,814,543 + RPSI07_RS06765 0.84 -0.4
1,814,543 + RPSI07_RS06765 0.84 +0.3
1,814,543 + RPSI07_RS06765 0.84 -1.7
1,814,544 - RPSI07_RS06765 0.84 +0.2
1,814,544 - RPSI07_RS06765 0.84 +1.5
1,814,544 - RPSI07_RS06765 0.84 +1.2
1,814,549 + RPSI07_RS06765 0.84 -1.7
1,814,549 + RPSI07_RS06765 0.84 -0.8
1,814,549 + RPSI07_RS06765 0.84 -2.9
1,814,549 + RPSI07_RS06765 0.84 -0.5
1,814,549 + RPSI07_RS06765 0.84 -0.1
1,814,549 + RPSI07_RS06765 0.84 +1.3
1,814,549 + RPSI07_RS06765 0.84 +0.4
1,814,549 + RPSI07_RS06765 0.84 -1.2
1,814,549 + RPSI07_RS06765 0.84 -1.6
1,814,549 + RPSI07_RS06765 0.84 -0.8
1,814,549 + RPSI07_RS06765 0.84 -1.5
1,814,550 - RPSI07_RS06765 0.84 -1.2
1,814,550 - RPSI07_RS06765 0.84 -0.1
1,814,550 - RPSI07_RS06765 0.84 +1.8
1,814,550 - RPSI07_RS06765 0.84 +2.4
1,814,550 - RPSI07_RS06765 0.84 -0.8
1,814,550 - RPSI07_RS06765 0.84 +1.8
1,814,888 - RPSI07_RS06770 0.14 +0.4
1,814,888 - RPSI07_RS06770 0.14 +0.8
1,814,888 - RPSI07_RS06770 0.14 -0.7
1,814,983 + RPSI07_RS06770 0.23 -0.7
1,814,983 + RPSI07_RS06770 0.23 -0.8
1,815,145 + RPSI07_RS06770 0.38 -1.0
1,815,146 - RPSI07_RS06770 0.39 +0.0
1,815,146 - RPSI07_RS06770 0.39 +1.6
1,815,397 + RPSI07_RS06770 0.62 -0.3
1,815,397 + RPSI07_RS06770 0.62 +0.0
1,815,479 - RPSI07_RS06770 0.70 +0.5
1,815,479 - RPSI07_RS06770 0.70 -1.2
1,815,496 + RPSI07_RS06770 0.72 -0.8
1,815,496 + RPSI07_RS06770 0.72 +2.4
1,815,592 + RPSI07_RS06770 0.81 +1.3
1,815,592 + RPSI07_RS06770 0.81 +0.3
1,815,592 + RPSI07_RS06770 0.81 +0.7
1,815,592 + RPSI07_RS06770 0.81 -1.2
1,815,593 - RPSI07_RS06770 0.81 -0.0
1,815,593 - RPSI07_RS06770 0.81 +0.5
1,815,593 - RPSI07_RS06770 0.81 +0.2
1,815,593 - RPSI07_RS06770 0.81 -0.3

Or see this region's nucleotide sequence