Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04415

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04410 and RPSI07_RS04415 are separated by 114 nucleotidesRPSI07_RS04415 and RPSI07_RS04420 are separated by 86 nucleotidesRPSI07_RS04420 and RPSI07_RS24395 are separated by 242 nucleotides RPSI07_RS04410: RPSI07_RS04410 - tartrate dehydrogenase, at 1,191,260 to 1,192,345 _RS04410 RPSI07_RS04415: RPSI07_RS04415 - LysR family transcriptional regulator, at 1,192,460 to 1,193,380 _RS04415 RPSI07_RS04420: RPSI07_RS04420 - rhomboid family intramembrane serine protease, at 1,193,467 to 1,194,060 _RS04420 RPSI07_RS24395: RPSI07_RS24395 - hypothetical protein, at 1,194,303 to 1,194,632 _RS24395 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1191.934 kb on - strand, within RPSI07_RS04410at 1191.934 kb on - strand, within RPSI07_RS04410at 1192.197 kb on + strand, within RPSI07_RS04410at 1192.198 kb on - strand, within RPSI07_RS04410at 1192.198 kb on - strand, within RPSI07_RS04410at 1192.198 kb on - strand, within RPSI07_RS04410at 1192.200 kb on + strand, within RPSI07_RS04410at 1192.200 kb on + strand, within RPSI07_RS04410at 1192.201 kb on - strand, within RPSI07_RS04410at 1192.335 kb on + strandat 1192.336 kb on - strandat 1192.426 kb on - strandat 1192.624 kb on + strand, within RPSI07_RS04415at 1192.624 kb on + strand, within RPSI07_RS04415at 1192.624 kb on + strand, within RPSI07_RS04415at 1192.624 kb on + strand, within RPSI07_RS04415at 1192.625 kb on - strand, within RPSI07_RS04415at 1192.625 kb on - strand, within RPSI07_RS04415at 1192.625 kb on - strand, within RPSI07_RS04415at 1192.625 kb on - strand, within RPSI07_RS04415at 1192.811 kb on + strand, within RPSI07_RS04415at 1192.811 kb on + strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.812 kb on - strand, within RPSI07_RS04415at 1192.982 kb on + strand, within RPSI07_RS04415at 1193.066 kb on + strand, within RPSI07_RS04415at 1193.119 kb on + strand, within RPSI07_RS04415at 1193.226 kb on - strand, within RPSI07_RS04415at 1193.284 kb on + strand, within RPSI07_RS04415at 1193.285 kb on - strandat 1193.285 kb on - strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.288 kb on + strand, within RPSI07_RS04415at 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.289 kb on - strandat 1193.297 kb on + strandat 1193.297 kb on + strandat 1193.430 kb on + strandat 1193.430 kb on + strandat 1193.430 kb on + strandat 1193.430 kb on + strandat 1193.431 kb on - strandat 1193.431 kb on - strandat 1193.431 kb on - strandat 1193.431 kb on - strandat 1193.600 kb on + strand, within RPSI07_RS04420at 1193.601 kb on - strand, within RPSI07_RS04420at 1193.681 kb on + strand, within RPSI07_RS04420at 1193.681 kb on + strand, within RPSI07_RS04420at 1193.681 kb on + strand, within RPSI07_RS04420at 1193.681 kb on + strand, within RPSI07_RS04420at 1193.682 kb on - strand, within RPSI07_RS04420at 1193.682 kb on - strand, within RPSI07_RS04420at 1193.682 kb on - strand, within RPSI07_RS04420at 1193.682 kb on - strand, within RPSI07_RS04420at 1193.682 kb on - strand, within RPSI07_RS04420at 1193.798 kb on + strand, within RPSI07_RS04420at 1193.798 kb on + strand, within RPSI07_RS04420at 1193.798 kb on + strand, within RPSI07_RS04420at 1193.799 kb on - strand, within RPSI07_RS04420at 1193.799 kb on - strand, within RPSI07_RS04420at 1193.909 kb on + strand, within RPSI07_RS04420at 1193.909 kb on + strand, within RPSI07_RS04420at 1193.909 kb on + strandat 1193.909 kb on + strand, within RPSI07_RS04420at 1193.909 kb on + strand, within RPSI07_RS04420at 1193.909 kb on + strand, within RPSI07_RS04420at 1193.909 kb on + strand, within RPSI07_RS04420at 1193.909 kb on + strand, within RPSI07_RS04420at 1193.909 kb on + strand, within RPSI07_RS04420at 1193.909 kb on + strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1193.910 kb on - strand, within RPSI07_RS04420at 1194.070 kb on + strandat 1194.070 kb on + strandat 1194.070 kb on + strandat 1194.071 kb on - strandat 1194.071 kb on - strandat 1194.071 kb on - strandat 1194.089 kb on + strandat 1194.164 kb on + strandat 1194.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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1,191,934 - RPSI07_RS04410 0.62 -0.2
1,191,934 - RPSI07_RS04410 0.62 +1.7
1,192,197 + RPSI07_RS04410 0.86 +1.7
1,192,198 - RPSI07_RS04410 0.86 +0.7
1,192,198 - RPSI07_RS04410 0.86 -0.5
1,192,198 - RPSI07_RS04410 0.86 -0.9
1,192,200 + RPSI07_RS04410 0.87 +2.3
1,192,200 + RPSI07_RS04410 0.87 -0.8
1,192,201 - RPSI07_RS04410 0.87 +0.5
1,192,335 + +0.5
1,192,336 - +1.7
1,192,426 - +0.4
1,192,624 + RPSI07_RS04415 0.18 +0.7
1,192,624 + RPSI07_RS04415 0.18 -1.1
1,192,624 + RPSI07_RS04415 0.18 -0.2
1,192,624 + RPSI07_RS04415 0.18 -0.5
1,192,625 - RPSI07_RS04415 0.18 -1.2
1,192,625 - RPSI07_RS04415 0.18 +0.7
1,192,625 - RPSI07_RS04415 0.18 +1.7
1,192,625 - RPSI07_RS04415 0.18 +0.3
1,192,811 + RPSI07_RS04415 0.38 -0.2
1,192,811 + RPSI07_RS04415 0.38 -0.5
1,192,812 - RPSI07_RS04415 0.38 +1.7
1,192,812 - RPSI07_RS04415 0.38 +0.7
1,192,812 - RPSI07_RS04415 0.38 +0.2
1,192,812 - RPSI07_RS04415 0.38 -0.3
1,192,812 - RPSI07_RS04415 0.38 +0.6
1,192,982 + RPSI07_RS04415 0.57 +0.9
1,193,066 + RPSI07_RS04415 0.66 -0.3
1,193,119 + RPSI07_RS04415 0.72 +1.7
1,193,226 - RPSI07_RS04415 0.83 +1.7
1,193,284 + RPSI07_RS04415 0.89 -0.2
1,193,285 - +0.7
1,193,285 - RPSI07_RS04415 0.90 +0.3
1,193,288 + RPSI07_RS04415 0.90 -0.7
1,193,288 + RPSI07_RS04415 0.90 -1.3
1,193,288 + RPSI07_RS04415 0.90 -1.0
1,193,288 + RPSI07_RS04415 0.90 +0.5
1,193,288 + RPSI07_RS04415 0.90 -1.4
1,193,288 + RPSI07_RS04415 0.90 +0.5
1,193,288 + RPSI07_RS04415 0.90 +0.7
1,193,288 + RPSI07_RS04415 0.90 +2.7
1,193,288 + RPSI07_RS04415 0.90 +0.8
1,193,289 - +1.7
1,193,289 - -1.9
1,193,289 - +0.7
1,193,289 - -1.3
1,193,289 - +2.7
1,193,289 - -1.5
1,193,289 - -0.2
1,193,289 - -0.9
1,193,289 - +0.1
1,193,289 - -0.4
1,193,289 - -0.9
1,193,289 - +2.7
1,193,289 - +0.4
1,193,289 - -1.3
1,193,289 - +0.7
1,193,297 + -0.6
1,193,297 + -0.2
1,193,430 + -0.5
1,193,430 + -0.4
1,193,430 + -1.2
1,193,430 + +1.5
1,193,431 - -1.4
1,193,431 - +1.3
1,193,431 - +1.7
1,193,431 - -1.1
1,193,600 + RPSI07_RS04420 0.22 -0.3
1,193,601 - RPSI07_RS04420 0.23 -2.2
1,193,681 + RPSI07_RS04420 0.36 -1.7
1,193,681 + RPSI07_RS04420 0.36 -0.8
1,193,681 + RPSI07_RS04420 0.36 -0.2
1,193,681 + RPSI07_RS04420 0.36 +1.2
1,193,682 - RPSI07_RS04420 0.36 -0.2
1,193,682 - RPSI07_RS04420 0.36 -0.3
1,193,682 - RPSI07_RS04420 0.36 -1.3
1,193,682 - RPSI07_RS04420 0.36 +0.4
1,193,682 - RPSI07_RS04420 0.36 -0.9
1,193,798 + RPSI07_RS04420 0.56 +2.3
1,193,798 + RPSI07_RS04420 0.56 -0.7
1,193,798 + RPSI07_RS04420 0.56 -0.8
1,193,799 - RPSI07_RS04420 0.56 -0.6
1,193,799 - RPSI07_RS04420 0.56 +0.3
1,193,909 + RPSI07_RS04420 0.74 +1.3
1,193,909 + RPSI07_RS04420 0.74 -0.2
1,193,909 + -0.3
1,193,909 + RPSI07_RS04420 0.74 +0.5
1,193,909 + RPSI07_RS04420 0.74 +0.2
1,193,909 + RPSI07_RS04420 0.74 +0.2
1,193,909 + RPSI07_RS04420 0.74 -0.9
1,193,909 + RPSI07_RS04420 0.74 -1.3
1,193,909 + RPSI07_RS04420 0.74 +0.3
1,193,909 + RPSI07_RS04420 0.74 -0.3
1,193,910 - RPSI07_RS04420 0.75 +0.5
1,193,910 - RPSI07_RS04420 0.75 -0.6
1,193,910 - RPSI07_RS04420 0.75 +0.5
1,193,910 - RPSI07_RS04420 0.75 -0.5
1,193,910 - RPSI07_RS04420 0.75 +0.7
1,193,910 - RPSI07_RS04420 0.75 -0.1
1,193,910 - RPSI07_RS04420 0.75 -0.6
1,193,910 - RPSI07_RS04420 0.75 -0.4
1,193,910 - RPSI07_RS04420 0.75 +0.3
1,194,070 + -0.5
1,194,070 + -0.4
1,194,070 + +1.7
1,194,071 - +0.2
1,194,071 - -0.6
1,194,071 - -0.4
1,194,089 + +3.0
1,194,164 + -0.1
1,194,197 - +1.3

Or see this region's nucleotide sequence