Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0795

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0794 and Echvi_0795 overlap by 4 nucleotidesEchvi_0795 and Echvi_0796 are separated by 88 nucleotidesEchvi_0796 and Echvi_0797 overlap by 41 nucleotidesEchvi_0797 and Echvi_0798 are separated by 130 nucleotidesEchvi_0798 and Echvi_0799 overlap by 59 nucleotides Echvi_0794: Echvi_0794 - choline/carnitine/betaine transport, at 907,019 to 908,608 _0794 Echvi_0795: Echvi_0795 - Universal stress protein UspA and related nucleotide-binding proteins, at 908,605 to 909,462 _0795 Echvi_0796: Echvi_0796 - hypothetical protein, at 909,551 to 909,703 _0796 Echvi_0797: Echvi_0797 - Uncharacterised protein family (UPF0158)., at 909,663 to 910,103 _0797 Echvi_0798: Echvi_0798 - hypothetical protein, at 910,234 to 910,425 _0798 Echvi_0799: Echvi_0799 - Uncharacterized conserved protein, at 910,367 to 911,167 _0799 Position (kb) 908 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 907.666 kb on + strand, within Echvi_0794at 907.666 kb on + strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.670 kb on + strand, within Echvi_0794at 907.670 kb on + strand, within Echvi_0794at 907.707 kb on + strand, within Echvi_0794at 907.708 kb on - strand, within Echvi_0794at 907.798 kb on - strand, within Echvi_0794at 907.798 kb on - strand, within Echvi_0794at 907.848 kb on + strand, within Echvi_0794at 907.908 kb on + strand, within Echvi_0794at 907.984 kb on - strand, within Echvi_0794at 908.011 kb on + strand, within Echvi_0794at 908.020 kb on + strand, within Echvi_0794at 908.020 kb on + strand, within Echvi_0794at 908.020 kb on + strand, within Echvi_0794at 908.021 kb on - strand, within Echvi_0794at 908.062 kb on - strand, within Echvi_0794at 908.308 kb on + strand, within Echvi_0794at 908.347 kb on + strand, within Echvi_0794at 908.348 kb on - strand, within Echvi_0794at 908.348 kb on - strand, within Echvi_0794at 908.372 kb on - strand, within Echvi_0794at 908.385 kb on + strand, within Echvi_0794at 908.385 kb on + strand, within Echvi_0794at 908.386 kb on - strand, within Echvi_0794at 908.392 kb on - strand, within Echvi_0794at 908.671 kb on + strandat 908.671 kb on + strandat 908.674 kb on - strandat 908.902 kb on + strand, within Echvi_0795at 908.905 kb on - strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.212 kb on + strand, within Echvi_0795at 909.291 kb on + strand, within Echvi_0795at 909.292 kb on - strand, within Echvi_0795at 909.303 kb on + strand, within Echvi_0795at 909.303 kb on + strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.485 kb on - strandat 909.485 kb on - strandat 909.487 kb on + strandat 909.487 kb on + strandat 909.487 kb on + strandat 909.488 kb on - strandat 909.488 kb on - strandat 909.500 kb on + strandat 909.518 kb on + strandat 909.526 kb on + strandat 909.593 kb on + strand, within Echvi_0796at 909.655 kb on + strand, within Echvi_0796at 909.655 kb on + strand, within Echvi_0796at 909.673 kb on - strandat 909.677 kb on + strandat 909.678 kb on - strandat 909.678 kb on - strandat 909.682 kb on + strandat 909.682 kb on + strandat 909.682 kb on + strandat 909.683 kb on - strandat 909.683 kb on - strandat 909.683 kb on - strandat 909.687 kb on - strandat 909.749 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.798 kb on - strand, within Echvi_0797at 909.817 kb on + strand, within Echvi_0797at 909.817 kb on + strand, within Echvi_0797at 909.873 kb on + strand, within Echvi_0797at 909.873 kb on + strand, within Echvi_0797at 909.874 kb on - strand, within Echvi_0797at 910.036 kb on + strand, within Echvi_0797at 910.036 kb on + strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.129 kb on + strandat 910.130 kb on - strandat 910.144 kb on + strandat 910.144 kb on + strandat 910.263 kb on + strand, within Echvi_0798at 910.265 kb on + strand, within Echvi_0798at 910.265 kb on + strand, within Echvi_0798at 910.266 kb on - strand, within Echvi_0798at 910.266 kb on - strand, within Echvi_0798at 910.282 kb on + strand, within Echvi_0798at 910.283 kb on - strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.308 kb on - strand, within Echvi_0798at 910.384 kb on + strandat 910.427 kb on - strandat 910.428 kb on + strandat 910.429 kb on - strandat 910.429 kb on - strandat 910.448 kb on + strand, within Echvi_0799

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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907,666 + Echvi_0794 0.41 -0.0
907,666 + Echvi_0794 0.41 +0.2
907,667 - Echvi_0794 0.41 -0.6
907,667 - Echvi_0794 0.41 -0.4
907,667 - Echvi_0794 0.41 -0.0
907,670 + Echvi_0794 0.41 +0.4
907,670 + Echvi_0794 0.41 +0.1
907,707 + Echvi_0794 0.43 -0.8
907,708 - Echvi_0794 0.43 -0.6
907,798 - Echvi_0794 0.49 +0.3
907,798 - Echvi_0794 0.49 -0.3
907,848 + Echvi_0794 0.52 -0.2
907,908 + Echvi_0794 0.56 -1.0
907,984 - Echvi_0794 0.61 -0.6
908,011 + Echvi_0794 0.62 +0.6
908,020 + Echvi_0794 0.63 -0.8
908,020 + Echvi_0794 0.63 -0.7
908,020 + Echvi_0794 0.63 -0.8
908,021 - Echvi_0794 0.63 -2.0
908,062 - Echvi_0794 0.66 -0.4
908,308 + Echvi_0794 0.81 +0.6
908,347 + Echvi_0794 0.84 +0.4
908,348 - Echvi_0794 0.84 -1.6
908,348 - Echvi_0794 0.84 -0.2
908,372 - Echvi_0794 0.85 -1.1
908,385 + Echvi_0794 0.86 +0.2
908,385 + Echvi_0794 0.86 -0.6
908,386 - Echvi_0794 0.86 -0.6
908,392 - Echvi_0794 0.86 -0.0
908,671 + -0.0
908,671 + -1.6
908,674 - +1.0
908,902 + Echvi_0795 0.35 -1.6
908,905 - Echvi_0795 0.35 -0.6
909,076 + Echvi_0795 0.55 -0.3
909,076 + Echvi_0795 0.55 +1.0
909,076 + Echvi_0795 0.55 -0.5
909,076 + Echvi_0795 0.55 +2.0
909,076 + Echvi_0795 0.55 -0.5
909,077 - Echvi_0795 0.55 -0.8
909,077 - Echvi_0795 0.55 -2.9
909,077 - Echvi_0795 0.55 -0.9
909,077 - Echvi_0795 0.55 -0.5
909,212 + Echvi_0795 0.71 -0.6
909,291 + Echvi_0795 0.80 +0.2
909,292 - Echvi_0795 0.80 +1.0
909,303 + Echvi_0795 0.81 -0.0
909,303 + Echvi_0795 0.81 -1.4
909,304 - Echvi_0795 0.81 -1.0
909,304 - Echvi_0795 0.81 -1.6
909,304 - Echvi_0795 0.81 -0.4
909,304 - Echvi_0795 0.81 -0.6
909,304 - Echvi_0795 0.81 +0.3
909,485 - +1.2
909,485 - -0.0
909,487 + +3.4
909,487 + -1.6
909,487 + +0.5
909,488 - +0.9
909,488 - -0.5
909,500 + -0.0
909,518 + -0.4
909,526 + +0.5
909,593 + Echvi_0796 0.27 +0.7
909,655 + Echvi_0796 0.68 +1.4
909,655 + Echvi_0796 0.68 -0.6
909,673 - +1.4
909,677 + +0.5
909,678 - -1.0
909,678 - +0.3
909,682 + -0.5
909,682 + -0.0
909,682 + -0.5
909,683 - -1.8
909,683 - -1.6
909,683 - -1.5
909,687 - -0.0
909,749 + Echvi_0797 0.20 +0.6
909,751 + Echvi_0797 0.20 +0.7
909,751 + Echvi_0797 0.20 -0.5
909,751 + Echvi_0797 0.20 -2.6
909,751 + Echvi_0797 0.20 -0.2
909,751 + Echvi_0797 0.20 +0.6
909,752 - Echvi_0797 0.20 -0.0
909,752 - Echvi_0797 0.20 +0.5
909,752 - Echvi_0797 0.20 +0.7
909,798 - Echvi_0797 0.31 +0.5
909,817 + Echvi_0797 0.35 -0.8
909,817 + Echvi_0797 0.35 +0.1
909,873 + Echvi_0797 0.48 +1.0
909,873 + Echvi_0797 0.48 +0.4
909,874 - Echvi_0797 0.48 -0.2
910,036 + Echvi_0797 0.85 +0.1
910,036 + Echvi_0797 0.85 -0.5
910,037 - Echvi_0797 0.85 +1.2
910,037 - Echvi_0797 0.85 +0.5
910,037 - Echvi_0797 0.85 +0.4
910,041 + Echvi_0797 0.86 -0.7
910,041 + Echvi_0797 0.86 -0.8
910,041 + Echvi_0797 0.86 +0.2
910,042 - Echvi_0797 0.86 +1.1
910,042 - Echvi_0797 0.86 -1.0
910,042 - Echvi_0797 0.86 +0.1
910,042 - Echvi_0797 0.86 -1.0
910,042 - Echvi_0797 0.86 +1.3
910,129 + +0.6
910,130 - -0.3
910,144 + +0.4
910,144 + +0.5
910,263 + Echvi_0798 0.15 +0.2
910,265 + Echvi_0798 0.16 +2.5
910,265 + Echvi_0798 0.16 +1.1
910,266 - Echvi_0798 0.17 +0.9
910,266 - Echvi_0798 0.17 +1.0
910,282 + Echvi_0798 0.25 +0.7
910,283 - Echvi_0798 0.26 +0.2
910,307 + Echvi_0798 0.38 +0.3
910,307 + Echvi_0798 0.38 -1.4
910,307 + Echvi_0798 0.38 -0.8
910,308 - Echvi_0798 0.39 -0.0
910,384 + +1.0
910,427 - +0.4
910,428 + -2.2
910,429 - +0.8
910,429 - +0.0
910,448 + Echvi_0799 0.10 -1.0

Or see this region's nucleotide sequence