Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0274 and Echvi_0275 are separated by 48 nucleotides Echvi_0275 and Echvi_0276 are separated by 100 nucleotides Echvi_0276 and Echvi_0277 are separated by 12 nucleotides
Echvi_0274: Echvi_0274 - Aminopeptidase N, at 276,586 to 279,156
_0274
Echvi_0275: Echvi_0275 - Acetyl/propionyl-CoA carboxylase, alpha subunit, at 279,205 to 279,699
_0275
Echvi_0276: Echvi_0276 - uridylate kinase, at 279,800 to 280,510
_0276
Echvi_0277: Echvi_0277 - ribosome recycling factor, at 280,523 to 281,083
_0277
Position (kb) 279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 278.210 kb on + strand, within Echvi_0274 at 278.210 kb on + strand, within Echvi_0274 at 278.211 kb on - strand, within Echvi_0274 at 278.318 kb on + strand, within Echvi_0274 at 278.319 kb on - strand, within Echvi_0274 at 278.319 kb on - strand, within Echvi_0274 at 278.322 kb on - strand, within Echvi_0274 at 278.322 kb on - strand, within Echvi_0274 at 278.590 kb on + strand, within Echvi_0274 at 278.633 kb on + strand, within Echvi_0274 at 278.676 kb on + strand, within Echvi_0274 at 278.677 kb on - strand, within Echvi_0274 at 278.721 kb on + strand, within Echvi_0274 at 278.739 kb on + strand, within Echvi_0274 at 278.740 kb on - strand, within Echvi_0274 at 278.759 kb on - strand, within Echvi_0274 at 278.775 kb on - strand, within Echvi_0274 at 278.778 kb on + strand, within Echvi_0274 at 278.944 kb on - strand at 278.944 kb on - strand at 278.944 kb on - strand at 278.944 kb on - strand at 278.980 kb on - strand at 279.011 kb on - strand at 279.055 kb on + strand at 279.067 kb on - strand at 279.100 kb on - strand at 279.181 kb on - strand at 279.237 kb on + strand at 279.297 kb on - strand, within Echvi_0275 at 279.328 kb on - strand, within Echvi_0275 at 279.613 kb on - strand, within Echvi_0275 at 279.648 kb on - strand, within Echvi_0275 at 279.698 kb on - strand at 279.712 kb on - strand at 279.752 kb on + strand at 279.785 kb on + strand at 280.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 278,210 + Echvi_0274 0.63 +1.6 278,210 + Echvi_0274 0.63 +1.0 278,211 - Echvi_0274 0.63 +1.0 278,318 + Echvi_0274 0.67 -0.8 278,319 - Echvi_0274 0.67 +0.2 278,319 - Echvi_0274 0.67 +1.0 278,322 - Echvi_0274 0.68 -0.1 278,322 - Echvi_0274 0.68 +1.0 278,590 + Echvi_0274 0.78 -0.4 278,633 + Echvi_0274 0.80 -3.2 278,676 + Echvi_0274 0.81 +0.7 278,677 - Echvi_0274 0.81 -1.8 278,721 + Echvi_0274 0.83 -1.8 278,739 + Echvi_0274 0.84 +0.6 278,740 - Echvi_0274 0.84 +0.5 278,759 - Echvi_0274 0.85 -0.5 278,775 - Echvi_0274 0.85 -1.1 278,778 + Echvi_0274 0.85 -2.2 278,944 - -0.3 278,944 - -0.1 278,944 - +0.2 278,944 - -0.5 278,980 - +0.6 279,011 - -0.2 279,055 + +1.0 279,067 - -0.3 279,100 - +0.3 279,181 - -0.8 279,237 + -0.8 279,297 - Echvi_0275 0.19 -1.0 279,328 - Echvi_0275 0.25 +0.3 279,613 - Echvi_0275 0.82 -0.6 279,648 - Echvi_0275 0.89 -0.6 279,698 - -0.8 279,712 - -0.3 279,752 + -0.6 279,785 + -2.2 280,512 + +0.2
Or see this region's nucleotide sequence