Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS04835 and RPSI07_RS04840 overlap by 1 nucleotides RPSI07_RS04840 and RPSI07_RS04845 overlap by 4 nucleotides RPSI07_RS04845 and RPSI07_RS04850 are separated by 9 nucleotides
RPSI07_RS04835: RPSI07_RS04835 - formate dehydrogenase, at 1,312,500 to 1,314,839
_RS04835
RPSI07_RS04840: RPSI07_RS04840 - hypothetical protein, at 1,314,839 to 1,315,087
_RS04840
RPSI07_RS04845: RPSI07_RS04845 - sulfurtransferase FdhD, at 1,315,084 to 1,315,902
_RS04845
RPSI07_RS04850: RPSI07_RS04850 - PAS domain S-box protein, at 1,315,912 to 1,317,507
_RS04850
Position (kb) 1315
1316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1314.231 kb on + strand, within RPSI07_RS04835 at 1314.232 kb on - strand, within RPSI07_RS04835 at 1314.232 kb on - strand, within RPSI07_RS04835 at 1314.232 kb on - strand, within RPSI07_RS04835 at 1314.477 kb on + strand, within RPSI07_RS04835 at 1314.477 kb on + strand, within RPSI07_RS04835 at 1314.478 kb on - strand, within RPSI07_RS04835 at 1314.478 kb on - strand, within RPSI07_RS04835 at 1314.493 kb on - strand, within RPSI07_RS04835 at 1314.660 kb on + strand at 1314.690 kb on + strand at 1314.690 kb on + strand at 1314.693 kb on + strand at 1314.693 kb on + strand at 1314.694 kb on - strand at 1315.211 kb on + strand, within RPSI07_RS04845 at 1315.532 kb on + strand, within RPSI07_RS04845 at 1315.532 kb on + strand, within RPSI07_RS04845 at 1315.533 kb on - strand, within RPSI07_RS04845 at 1315.881 kb on + strand at 1315.901 kb on - strand at 1316.006 kb on + strand at 1316.035 kb on + strand at 1316.036 kb on + strand at 1316.036 kb on + strand at 1316.183 kb on + strand, within RPSI07_RS04850 at 1316.214 kb on + strand, within RPSI07_RS04850 at 1316.215 kb on - strand, within RPSI07_RS04850 at 1316.246 kb on + strand, within RPSI07_RS04850 at 1316.246 kb on + strand, within RPSI07_RS04850 at 1316.246 kb on + strand, within RPSI07_RS04850 at 1316.246 kb on + strand, within RPSI07_RS04850 at 1316.246 kb on + strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.247 kb on - strand, within RPSI07_RS04850 at 1316.436 kb on - strand, within RPSI07_RS04850 at 1316.436 kb on - strand, within RPSI07_RS04850 at 1316.436 kb on - strand, within RPSI07_RS04850 at 1316.458 kb on + strand, within RPSI07_RS04850 at 1316.458 kb on + strand, within RPSI07_RS04850 at 1316.459 kb on - strand, within RPSI07_RS04850 at 1316.670 kb on - strand, within RPSI07_RS04850
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 1,314,231 + RPSI07_RS04835 0.74 +0.2 1,314,232 - RPSI07_RS04835 0.74 -0.6 1,314,232 - RPSI07_RS04835 0.74 +0.4 1,314,232 - RPSI07_RS04835 0.74 +0.0 1,314,477 + RPSI07_RS04835 0.84 -0.4 1,314,477 + RPSI07_RS04835 0.84 +0.4 1,314,478 - RPSI07_RS04835 0.85 +1.0 1,314,478 - RPSI07_RS04835 0.85 +3.6 1,314,493 - RPSI07_RS04835 0.85 +2.4 1,314,660 + +1.4 1,314,690 + +0.0 1,314,690 + +1.6 1,314,693 + -1.2 1,314,693 + -0.0 1,314,694 - +0.2 1,315,211 + RPSI07_RS04845 0.16 +0.1 1,315,532 + RPSI07_RS04845 0.55 +2.2 1,315,532 + RPSI07_RS04845 0.55 -1.0 1,315,533 - RPSI07_RS04845 0.55 -2.9 1,315,881 + +0.8 1,315,901 - +0.0 1,316,006 + -0.3 1,316,035 + -1.1 1,316,036 + -0.1 1,316,036 + -0.2 1,316,183 + RPSI07_RS04850 0.17 +1.0 1,316,214 + RPSI07_RS04850 0.19 +0.2 1,316,215 - RPSI07_RS04850 0.19 +0.2 1,316,246 + RPSI07_RS04850 0.21 -0.4 1,316,246 + RPSI07_RS04850 0.21 -0.2 1,316,246 + RPSI07_RS04850 0.21 -0.4 1,316,246 + RPSI07_RS04850 0.21 +0.4 1,316,246 + RPSI07_RS04850 0.21 +2.6 1,316,247 - RPSI07_RS04850 0.21 -0.0 1,316,247 - RPSI07_RS04850 0.21 -0.9 1,316,247 - RPSI07_RS04850 0.21 +0.3 1,316,247 - RPSI07_RS04850 0.21 -0.6 1,316,247 - RPSI07_RS04850 0.21 -0.0 1,316,247 - RPSI07_RS04850 0.21 +0.1 1,316,247 - RPSI07_RS04850 0.21 -0.4 1,316,247 - RPSI07_RS04850 0.21 -0.6 1,316,247 - RPSI07_RS04850 0.21 +0.6 1,316,247 - RPSI07_RS04850 0.21 +0.8 1,316,436 - RPSI07_RS04850 0.33 +0.5 1,316,436 - RPSI07_RS04850 0.33 -0.8 1,316,436 - RPSI07_RS04850 0.33 +0.3 1,316,458 + RPSI07_RS04850 0.34 -0.4 1,316,458 + RPSI07_RS04850 0.34 -1.9 1,316,459 - RPSI07_RS04850 0.34 -0.0 1,316,670 - RPSI07_RS04850 0.47 +0.3
Or see this region's nucleotide sequence