Strain Fitness in Pseudomonas putida KT2440 around PP_1024

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1022 and PP_1023 overlap by 29 nucleotidesPP_1023 and PP_1024 overlap by 10 nucleotidesPP_1024 and PP_1025 are separated by 252 nucleotides PP_1022: PP_1022 - glucose 6-phosphate-1-dehydrogenase, at 1,165,616 to 1,167,085 _1022 PP_1023: PP_1023 - 6-phosphogluconolactonase, at 1,167,057 to 1,167,785 _1023 PP_1024: PP_1024 - KHG/KDPG aldolase, at 1,167,776 to 1,168,483 _1024 PP_1025: PP_1025 - 2-isopropylmalate synthase, at 1,168,736 to 1,170,409 _1025 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1166.870 kb on + strand, within PP_1022at 1166.870 kb on + strand, within PP_1022at 1166.871 kb on - strand, within PP_1022at 1166.981 kb on - strandat 1166.981 kb on - strandat 1166.981 kb on - strandat 1167.079 kb on + strandat 1168.501 kb on - strandat 1168.547 kb on + strandat 1168.547 kb on + strandat 1168.548 kb on - strandat 1168.581 kb on - strandat 1168.592 kb on + strandat 1168.641 kb on - strandat 1168.643 kb on + strandat 1168.643 kb on + strandat 1168.644 kb on - strandat 1168.644 kb on - strandat 1168.644 kb on - strandat 1168.838 kb on + strandat 1168.839 kb on - strandat 1168.872 kb on + strandat 1168.872 kb on + strandat 1168.872 kb on + strandat 1168.873 kb on - strandat 1168.920 kb on + strand, within PP_1025at 1168.920 kb on + strand, within PP_1025at 1169.082 kb on + strand, within PP_1025at 1169.082 kb on + strand, within PP_1025at 1169.082 kb on + strand, within PP_1025at 1169.082 kb on + strand, within PP_1025at 1169.083 kb on - strand, within PP_1025at 1169.103 kb on + strand, within PP_1025at 1169.103 kb on + strand, within PP_1025at 1169.103 kb on + strand, within PP_1025at 1169.103 kb on + strand, within PP_1025at 1169.103 kb on + strand, within PP_1025at 1169.104 kb on - strand, within PP_1025at 1169.104 kb on - strand, within PP_1025at 1169.104 kb on - strand, within PP_1025at 1169.104 kb on - strand, within PP_1025at 1169.124 kb on + strand, within PP_1025at 1169.124 kb on + strand, within PP_1025at 1169.125 kb on - strand, within PP_1025at 1169.224 kb on - strand, within PP_1025at 1169.224 kb on - strand, within PP_1025at 1169.241 kb on + strand, within PP_1025at 1169.241 kb on + strand, within PP_1025at 1169.242 kb on - strand, within PP_1025at 1169.242 kb on - strand, within PP_1025at 1169.292 kb on + strand, within PP_1025at 1169.292 kb on + strand, within PP_1025at 1169.329 kb on - strand, within PP_1025at 1169.430 kb on + strand, within PP_1025at 1169.430 kb on + strand, within PP_1025at 1169.430 kb on + strand, within PP_1025at 1169.430 kb on + strand, within PP_1025at 1169.430 kb on + strand, within PP_1025at 1169.430 kb on + strand, within PP_1025at 1169.431 kb on - strand, within PP_1025at 1169.431 kb on - strand, within PP_1025at 1169.447 kb on + strand, within PP_1025

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,166,870 + PP_1022 0.85 -1.7
1,166,870 + PP_1022 0.85 -3.1
1,166,871 - PP_1022 0.85 -2.0
1,166,981 - -1.3
1,166,981 - -1.3
1,166,981 - +1.0
1,167,079 + -2.8
1,168,501 - +0.4
1,168,547 + -0.4
1,168,547 + -0.1
1,168,548 - +0.8
1,168,581 - +0.6
1,168,592 + +0.4
1,168,641 - +1.0
1,168,643 + -0.2
1,168,643 + -0.4
1,168,644 - +0.0
1,168,644 - +0.3
1,168,644 - +0.2
1,168,838 + -4.2
1,168,839 - -3.7
1,168,872 + -1.3
1,168,872 + -4.0
1,168,872 + -3.7
1,168,873 - -2.8
1,168,920 + PP_1025 0.11 -1.5
1,168,920 + PP_1025 0.11 -2.7
1,169,082 + PP_1025 0.21 -1.7
1,169,082 + PP_1025 0.21 -0.7
1,169,082 + PP_1025 0.21 -3.4
1,169,082 + PP_1025 0.21 -1.2
1,169,083 - PP_1025 0.21 -0.9
1,169,103 + PP_1025 0.22 -2.6
1,169,103 + PP_1025 0.22 -1.8
1,169,103 + PP_1025 0.22 -3.8
1,169,103 + PP_1025 0.22 -3.3
1,169,103 + PP_1025 0.22 -2.5
1,169,104 - PP_1025 0.22 -2.1
1,169,104 - PP_1025 0.22 -3.5
1,169,104 - PP_1025 0.22 -5.0
1,169,104 - PP_1025 0.22 -3.9
1,169,124 + PP_1025 0.23 -4.4
1,169,124 + PP_1025 0.23 -3.7
1,169,125 - PP_1025 0.23 -4.1
1,169,224 - PP_1025 0.29 -4.2
1,169,224 - PP_1025 0.29 -3.4
1,169,241 + PP_1025 0.30 -4.3
1,169,241 + PP_1025 0.30 -1.0
1,169,242 - PP_1025 0.30 -1.3
1,169,242 - PP_1025 0.30 -3.2
1,169,292 + PP_1025 0.33 -4.7
1,169,292 + PP_1025 0.33 -3.5
1,169,329 - PP_1025 0.35 -2.7
1,169,430 + PP_1025 0.41 -4.6
1,169,430 + PP_1025 0.41 -2.4
1,169,430 + PP_1025 0.41 -3.9
1,169,430 + PP_1025 0.41 -4.2
1,169,430 + PP_1025 0.41 -4.9
1,169,430 + PP_1025 0.41 -3.5
1,169,431 - PP_1025 0.42 -4.4
1,169,431 - PP_1025 0.42 -4.1
1,169,447 + PP_1025 0.42 -4.2

Or see this region's nucleotide sequence