Experiment: R2A with Nitrofurantoin 0.4 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6045 and Atu6046 are separated by 8 nucleotides Atu6046 and Atu6047 are separated by 111 nucleotides
Atu6045: Atu6045 - replication protein C, at 54,905 to 56,224
Atu6045
Atu6046: Atu6046 - DNA invertase, at 56,233 to 57,345
Atu6046
Atu6047: Atu6047 - conserved hypothetical protein, at 57,457 to 58,566
Atu6047
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.091 kb on + strand, within Atu6045 at 56.099 kb on - strand at 56.142 kb on + strand at 56.142 kb on + strand at 56.152 kb on - strand at 56.152 kb on - strand at 56.160 kb on - strand at 56.167 kb on - strand at 56.337 kb on + strand at 56.354 kb on + strand, within Atu6046 at 56.354 kb on + strand, within Atu6046 at 56.362 kb on - strand, within Atu6046 at 56.403 kb on + strand, within Atu6046 at 56.415 kb on + strand, within Atu6046 at 56.515 kb on + strand, within Atu6046 at 56.548 kb on - strand, within Atu6046 at 56.558 kb on - strand, within Atu6046 at 56.569 kb on + strand, within Atu6046 at 56.606 kb on + strand, within Atu6046 at 56.629 kb on + strand, within Atu6046 at 56.631 kb on + strand, within Atu6046 at 56.669 kb on + strand, within Atu6046 at 56.669 kb on - strand, within Atu6046 at 56.791 kb on - strand, within Atu6046 at 56.888 kb on + strand, within Atu6046 at 56.910 kb on + strand, within Atu6046 at 56.911 kb on - strand, within Atu6046 at 56.978 kb on + strand, within Atu6046 at 57.199 kb on - strand, within Atu6046 at 57.362 kb on + strand at 57.415 kb on + strand at 57.496 kb on + strand at 57.512 kb on + strand at 57.573 kb on - strand, within Atu6047 at 57.589 kb on + strand, within Atu6047 at 57.637 kb on - strand, within Atu6047 at 57.676 kb on - strand, within Atu6047 at 57.690 kb on - strand, within Atu6047 at 57.744 kb on + strand, within Atu6047 at 57.748 kb on + strand, within Atu6047 at 57.760 kb on + strand, within Atu6047 at 57.827 kb on - strand, within Atu6047 at 57.851 kb on + strand, within Atu6047 at 57.857 kb on + strand, within Atu6047 at 57.867 kb on + strand, within Atu6047 at 57.916 kb on - strand, within Atu6047 at 57.924 kb on - strand, within Atu6047 at 57.946 kb on - strand, within Atu6047 at 57.964 kb on - strand, within Atu6047 at 57.972 kb on + strand, within Atu6047 at 58.059 kb on + strand, within Atu6047 at 58.067 kb on - strand, within Atu6047 at 58.084 kb on + strand, within Atu6047 at 58.084 kb on + strand, within Atu6047 at 58.101 kb on + strand, within Atu6047 at 58.109 kb on - strand, within Atu6047 at 58.129 kb on - strand, within Atu6047 at 58.143 kb on + strand, within Atu6047 at 58.151 kb on - strand, within Atu6047 at 58.199 kb on + strand, within Atu6047 at 58.235 kb on - strand, within Atu6047 at 58.271 kb on - strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.310 kb on + strand, within Atu6047 at 58.318 kb on - strand, within Atu6047 at 58.318 kb on - strand, within Atu6047 at 58.318 kb on - strand, within Atu6047 at 58.318 kb on - strand, within Atu6047 at 58.328 kb on - strand, within Atu6047
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL remove 56,091 + Atu6045 0.90 -0.0 56,099 - -0.9 56,142 + -0.0 56,142 + -0.2 56,152 - -0.7 56,152 - -0.6 56,160 - -1.5 56,167 - -0.4 56,337 + +2.0 56,354 + Atu6046 0.11 +0.6 56,354 + Atu6046 0.11 +0.9 56,362 - Atu6046 0.12 +0.3 56,403 + Atu6046 0.15 +0.5 56,415 + Atu6046 0.16 +2.6 56,515 + Atu6046 0.25 -0.2 56,548 - Atu6046 0.28 +0.2 56,558 - Atu6046 0.29 +0.1 56,569 + Atu6046 0.30 +0.9 56,606 + Atu6046 0.34 +0.7 56,629 + Atu6046 0.36 +0.7 56,631 + Atu6046 0.36 +1.3 56,669 + Atu6046 0.39 -0.2 56,669 - Atu6046 0.39 +1.0 56,791 - Atu6046 0.50 -0.0 56,888 + Atu6046 0.59 +0.6 56,910 + Atu6046 0.61 +0.3 56,911 - Atu6046 0.61 -0.4 56,978 + Atu6046 0.67 +0.5 57,199 - Atu6046 0.87 -0.6 57,362 + +0.6 57,415 + +0.8 57,496 + +0.0 57,512 + +1.2 57,573 - Atu6047 0.10 -1.3 57,589 + Atu6047 0.12 -0.1 57,637 - Atu6047 0.16 +1.5 57,676 - Atu6047 0.20 +0.2 57,690 - Atu6047 0.21 -0.5 57,744 + Atu6047 0.26 +2.5 57,748 + Atu6047 0.26 -0.0 57,760 + Atu6047 0.27 +0.8 57,827 - Atu6047 0.33 +0.6 57,851 + Atu6047 0.35 +1.0 57,857 + Atu6047 0.36 +0.7 57,867 + Atu6047 0.37 +0.4 57,916 - Atu6047 0.41 +0.8 57,924 - Atu6047 0.42 +0.2 57,946 - Atu6047 0.44 -0.1 57,964 - Atu6047 0.46 +0.6 57,972 + Atu6047 0.46 +0.4 58,059 + Atu6047 0.54 +1.6 58,067 - Atu6047 0.55 +0.8 58,084 + Atu6047 0.56 -0.7 58,084 + Atu6047 0.56 +1.1 58,101 + Atu6047 0.58 +0.5 58,109 - Atu6047 0.59 +0.3 58,129 - Atu6047 0.61 +0.6 58,143 + Atu6047 0.62 +0.7 58,151 - Atu6047 0.63 +0.9 58,199 + Atu6047 0.67 +1.8 58,235 - Atu6047 0.70 +0.6 58,271 - Atu6047 0.73 +1.3 58,310 + Atu6047 0.77 -0.1 58,310 + Atu6047 0.77 +0.1 58,310 + Atu6047 0.77 +0.5 58,310 + Atu6047 0.77 -0.1 58,310 + Atu6047 0.77 +0.2 58,310 + Atu6047 0.77 +0.5 58,318 - Atu6047 0.78 +0.2 58,318 - Atu6047 0.78 +0.8 58,318 - Atu6047 0.78 +0.8 58,318 - Atu6047 0.78 -1.8 58,328 - Atu6047 0.78 +0.9
Or see this region's nucleotide sequence