Strain Fitness in Agrobacterium fabrum C58 around Atu4153

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,269,238	+		Atu4151	0.23	-0.2
1,269,384	+		Atu4151	0.39	-0.3
1,269,384	+		Atu4151	0.39	+0.5
1,269,407	+		Atu4151	0.41	-0.1
1,269,407	+		Atu4151	0.41	+0.5
1,269,681	-		Atu4151	0.72	-0.9
1,269,765	+		Atu4151	0.81	+0.2
1,269,797	-		Atu4151	0.85	-0.3
1,269,890	-				+0.6
1,270,097	-				+0.2
1,270,167	-				-0.2
1,270,190	+				-0.6
1,270,282	+				-0.3
1,270,282	+				+0.8
1,270,282	+				-0.5
1,270,282	+				-0.1
1,270,282	+				-1.1
1,270,282	+				+0.3
1,270,282	+				+0.3
1,270,290	-				-0.8
1,270,290	-				-0.2
1,270,290	-				-0.1
1,270,290	-				-0.1
1,270,290	-				+0.8
1,270,290	-				-0.0
1,270,290	-				-0.2
1,270,290	-				-0.5
1,270,290	-				-0.7
1,270,290	-				-0.9
1,270,290	-				-1.0
1,270,312	-		Atu4153	0.11	-0.6
1,270,379	+		Atu4153	0.15	-0.6
1,270,534	+		Atu4153	0.25	-0.7
1,270,534	+		Atu4153	0.25	-0.8
1,270,569	+		Atu4153	0.28	-0.8
1,270,746	-		Atu4153	0.39	-0.6
1,270,792	-		Atu4153	0.42	+0.2
1,270,847	+		Atu4153	0.46	-0.5
1,270,901	+		Atu4153	0.49	-0.6
1,271,150	-		Atu4153	0.65	-0.2
1,271,234	-		Atu4153	0.71	-2.1
1,271,283	+		Atu4153	0.74	-0.2
1,271,354	+		Atu4153	0.79	+0.6
1,271,388	-		Atu4153	0.81	-0.9
1,271,699	+				+0.6
1,271,774	+				-0.2
1,271,861	+				-0.1
1,271,891	+				-0.0
1,271,891	+				+0.3
1,272,074	+		Atu4154	0.18	+0.4
1,272,092	+		Atu4154	0.19	-0.1
1,272,100	-		Atu4154	0.20	+0.0
1,272,104	+		Atu4154	0.21	-1.1
1,272,239	+		Atu4154	0.35	+2.5
1,272,319	-		Atu4154	0.43	-0.2
1,272,398	+		Atu4154	0.51	-0.4
1,272,511	+		Atu4154	0.63	-0.2
1,272,531	-		Atu4154	0.65	-0.1
1,272,554	-		Atu4154	0.68	+0.1
1,272,588	+		Atu4154	0.71	-0.2
1,272,593	+		Atu4154	0.72	-0.2
1,272,613	-		Atu4154	0.74	-0.2
1,272,639	+		Atu4154	0.77	-0.2