Experiment: R2A with Nitrofurantoin 0.4 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3196 and Atu3197 are separated by 536 nucleotides Atu3197 and Atu3198 are separated by 72 nucleotides
Atu3196: Atu3196 - ornithine decarboxylase, at 204,249 to 205,382
Atu3196
Atu3197: Atu3197 - LysR family transcriptional regulator, at 205,919 to 206,812
Atu3197
Atu3198: Atu3198 - ribose ABC transporter substrate-binding protein, at 206,885 to 207,838
Atu3198
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1 at 205.431 kb on - strand at 205.792 kb on - strand at 205.912 kb on - strand at 206.081 kb on - strand, within Atu3197 at 206.100 kb on - strand, within Atu3197 at 206.109 kb on + strand, within Atu3197 at 206.154 kb on + strand, within Atu3197 at 206.228 kb on - strand, within Atu3197 at 206.241 kb on + strand, within Atu3197 at 206.338 kb on - strand, within Atu3197 at 206.359 kb on + strand, within Atu3197 at 206.447 kb on - strand, within Atu3197 at 206.563 kb on - strand, within Atu3197 at 206.593 kb on + strand, within Atu3197 at 206.618 kb on + strand, within Atu3197 at 206.660 kb on - strand, within Atu3197 at 206.662 kb on + strand, within Atu3197 at 206.685 kb on - strand, within Atu3197 at 206.818 kb on + strand at 206.906 kb on + strand at 206.957 kb on - strand at 207.183 kb on + strand, within Atu3198 at 207.183 kb on + strand, within Atu3198 at 207.224 kb on - strand, within Atu3198 at 207.295 kb on + strand, within Atu3198 at 207.297 kb on + strand, within Atu3198 at 207.428 kb on - strand, within Atu3198 at 207.536 kb on - strand, within Atu3198 at 207.603 kb on + strand, within Atu3198 at 207.640 kb on - strand, within Atu3198 at 207.652 kb on + strand, within Atu3198
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL remove 205,431 - -0.5 205,792 - -1.2 205,912 - +0.1 206,081 - Atu3197 0.18 -0.8 206,100 - Atu3197 0.20 +0.5 206,109 + Atu3197 0.21 -0.1 206,154 + Atu3197 0.26 +1.1 206,228 - Atu3197 0.35 -0.0 206,241 + Atu3197 0.36 +0.1 206,338 - Atu3197 0.47 +1.0 206,359 + Atu3197 0.49 +0.6 206,447 - Atu3197 0.59 -0.3 206,563 - Atu3197 0.72 -0.2 206,593 + Atu3197 0.75 -0.0 206,618 + Atu3197 0.78 +1.5 206,660 - Atu3197 0.83 +0.1 206,662 + Atu3197 0.83 -0.3 206,685 - Atu3197 0.86 +0.2 206,818 + +0.9 206,906 + +0.7 206,957 - -1.1 207,183 + Atu3198 0.31 -0.4 207,183 + Atu3198 0.31 +0.2 207,224 - Atu3198 0.36 -0.0 207,295 + Atu3198 0.43 -0.4 207,297 + Atu3198 0.43 -0.5 207,428 - Atu3198 0.57 -0.3 207,536 - Atu3198 0.68 +0.6 207,603 + Atu3198 0.75 +0.6 207,640 - Atu3198 0.79 +0.7 207,652 + Atu3198 0.80 -0.6
Or see this region's nucleotide sequence