Experiment: R2A with Nitrofurantoin 0.4 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3192 and Atu3193 are separated by 69 nucleotides Atu3193 and Atu3194 are separated by 146 nucleotides Atu3194 and Atu3196 are separated by 250 nucleotides
Atu3192: Atu3192 - MFS permease, at 201,516 to 202,811
Atu3192
Atu3193: Atu3193 - MarR family transcriptional regulator, at 202,881 to 203,282
Atu3193
Atu3194: Atu3194 - acetyltransferase, at 203,429 to 203,998
Atu3194
Atu3196: Atu3196 - ornithine decarboxylase, at 204,249 to 205,382
Atu3196
Position (kb) 203
204 Strain fitness (log2 ratio) -1
0
1 at 202.533 kb on + strand, within Atu3192 at 202.533 kb on + strand, within Atu3192 at 202.594 kb on + strand, within Atu3192 at 202.694 kb on + strand at 202.944 kb on - strand, within Atu3193 at 203.023 kb on - strand, within Atu3193 at 203.033 kb on - strand, within Atu3193 at 203.096 kb on - strand, within Atu3193 at 203.178 kb on - strand, within Atu3193 at 203.231 kb on - strand, within Atu3193 at 203.250 kb on - strand at 203.322 kb on - strand at 203.343 kb on + strand at 203.343 kb on + strand at 203.398 kb on - strand at 203.466 kb on - strand at 203.616 kb on - strand, within Atu3194 at 203.654 kb on + strand, within Atu3194 at 203.659 kb on + strand, within Atu3194 at 203.662 kb on - strand, within Atu3194 at 203.662 kb on - strand, within Atu3194 at 203.662 kb on - strand, within Atu3194 at 203.681 kb on - strand, within Atu3194 at 203.681 kb on - strand, within Atu3194 at 203.681 kb on - strand, within Atu3194 at 203.681 kb on - strand, within Atu3194 at 203.902 kb on - strand, within Atu3194 at 203.903 kb on + strand, within Atu3194 at 204.011 kb on - strand at 204.075 kb on + strand at 204.086 kb on + strand at 204.130 kb on + strand at 204.168 kb on - strand at 204.215 kb on + strand at 204.264 kb on - strand at 204.270 kb on - strand at 204.381 kb on - strand, within Atu3196
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL remove 202,533 + Atu3192 0.78 +0.3 202,533 + Atu3192 0.78 +0.2 202,594 + Atu3192 0.83 -0.8 202,694 + +0.2 202,944 - Atu3193 0.16 -0.3 203,023 - Atu3193 0.35 -0.7 203,033 - Atu3193 0.38 -0.8 203,096 - Atu3193 0.53 -0.5 203,178 - Atu3193 0.74 -0.2 203,231 - Atu3193 0.87 -0.4 203,250 - +0.7 203,322 - -0.7 203,343 + +0.3 203,343 + +0.2 203,398 - -0.0 203,466 - -0.2 203,616 - Atu3194 0.33 +0.5 203,654 + Atu3194 0.39 +0.2 203,659 + Atu3194 0.40 -0.3 203,662 - Atu3194 0.41 -0.1 203,662 - Atu3194 0.41 -0.6 203,662 - Atu3194 0.41 -0.6 203,681 - Atu3194 0.44 +0.1 203,681 - Atu3194 0.44 -0.6 203,681 - Atu3194 0.44 -1.6 203,681 - Atu3194 0.44 -0.0 203,902 - Atu3194 0.83 -0.8 203,903 + Atu3194 0.83 -0.2 204,011 - -0.2 204,075 + -0.0 204,086 + +0.2 204,130 + +0.1 204,168 - +0.2 204,215 + +0.4 204,264 - +0.2 204,270 - -0.6 204,381 - Atu3196 0.12 +0.5
Or see this region's nucleotide sequence