Experiment: R2A with Nitrofurantoin 0.4 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3035 and Atu3036 are separated by 243 nucleotides Atu3036 and Atu3037 overlap by 1 nucleotides Atu3037 and Atu3038 are separated by 4 nucleotides
Atu3035: Atu3035 - two component response regulator, at 27,551 to 29,794
Atu3035
Atu3036: Atu3036 - dipeptide ABC transporter permease, at 30,038 to 31,066
Atu3036
Atu3037: Atu3037 - dipeptide ABC transporter permease, at 31,066 to 31,947
Atu3037
Atu3038: Atu3038 - dipeptide ABC transporter ATPase, at 31,952 to 33,598
Atu3038
Position (kb)
30
31
32 Strain fitness (log2 ratio)
-1
0
1 at 29.053 kb on - strand, within Atu3035 at 29.100 kb on - strand, within Atu3035 at 29.100 kb on - strand, within Atu3035 at 29.212 kb on + strand, within Atu3035 at 29.298 kb on - strand, within Atu3035 at 29.375 kb on + strand, within Atu3035 at 29.435 kb on + strand, within Atu3035 at 29.618 kb on - strand at 29.676 kb on + strand at 29.678 kb on + strand at 29.762 kb on + strand at 29.762 kb on + strand at 29.772 kb on - strand at 29.896 kb on - strand at 30.091 kb on + strand at 30.358 kb on + strand, within Atu3036 at 30.358 kb on + strand, within Atu3036 at 30.358 kb on + strand, within Atu3036 at 30.596 kb on - strand, within Atu3036 at 30.758 kb on - strand, within Atu3036 at 30.938 kb on - strand, within Atu3036 at 30.946 kb on + strand, within Atu3036 at 31.006 kb on + strand at 31.099 kb on - strand at 31.104 kb on - strand at 31.131 kb on - strand at 31.231 kb on - strand, within Atu3037 at 31.342 kb on - strand, within Atu3037 at 31.379 kb on + strand, within Atu3037 at 31.402 kb on + strand, within Atu3037 at 31.405 kb on - strand, within Atu3037 at 31.587 kb on + strand, within Atu3037 at 31.669 kb on + strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.764 kb on - strand, within Atu3037 at 31.793 kb on + strand, within Atu3037 at 31.800 kb on - strand, within Atu3037 at 31.801 kb on - strand, within Atu3037 at 31.857 kb on + strand, within Atu3037 at 31.862 kb on + strand at 31.865 kb on - strand at 31.870 kb on - strand at 31.873 kb on + strand at 31.873 kb on + strand at 31.895 kb on + strand at 31.956 kb on - strand at 31.961 kb on - strand at 32.008 kb on - strand at 32.021 kb on + strand at 32.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL remove 29,053 - Atu3035 0.67 -0.3 29,100 - Atu3035 0.69 +0.1 29,100 - Atu3035 0.69 -0.1 29,212 + Atu3035 0.74 +0.7 29,298 - Atu3035 0.78 -0.3 29,375 + Atu3035 0.81 -0.3 29,435 + Atu3035 0.84 +0.1 29,618 - +0.3 29,676 + +0.7 29,678 + +0.4 29,762 + -0.1 29,762 + -0.2 29,772 - +0.1 29,896 - +0.2 30,091 + -0.2 30,358 + Atu3036 0.31 -1.0 30,358 + Atu3036 0.31 -0.4 30,358 + Atu3036 0.31 -0.6 30,596 - Atu3036 0.54 -0.2 30,758 - Atu3036 0.70 -0.1 30,938 - Atu3036 0.87 -0.7 30,946 + Atu3036 0.88 -0.4 31,006 + -0.2 31,099 - -0.4 31,104 - -0.3 31,131 - -1.0 31,231 - Atu3037 0.19 -0.5 31,342 - Atu3037 0.31 -0.1 31,379 + Atu3037 0.35 +0.4 31,402 + Atu3037 0.38 -0.1 31,405 - Atu3037 0.38 -0.3 31,587 + Atu3037 0.59 -0.4 31,669 + Atu3037 0.68 +0.3 31,718 - Atu3037 0.74 -0.4 31,718 - Atu3037 0.74 +0.1 31,718 - Atu3037 0.74 +1.6 31,764 - Atu3037 0.79 +0.0 31,793 + Atu3037 0.82 -0.3 31,800 - Atu3037 0.83 +0.0 31,801 - Atu3037 0.83 -0.4 31,857 + Atu3037 0.90 -0.0 31,862 + -0.5 31,865 - -0.7 31,870 - +0.9 31,873 + +1.1 31,873 + +0.8 31,895 + -0.3 31,956 - +0.6 31,961 - -0.2 32,008 - -0.5 32,021 + -0.2 32,029 - -0.1
Or see this region's nucleotide sequence