Strain Fitness in Agrobacterium fabrum C58 around Atu2650

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,632,529	-		Atu2647	0.75	+0.8
2,632,536	-		Atu2647	0.76	+0.2
2,632,580	+		Atu2647	0.83	-0.0
2,632,588	-		Atu2647	0.84	-0.1
2,632,675	+				-0.1
2,632,783	-		Atu2648	0.20	-1.8
2,632,807	-		Atu2648	0.25	-2.5
2,632,883	+		Atu2648	0.42	-0.5
2,632,959	-		Atu2648	0.59	+0.1
2,632,967	-		Atu2648	0.61	-2.4
2,632,984	+		Atu2648	0.65	+0.5
2,633,072	+		Atu2648	0.85	-1.7
2,633,080	-		Atu2648	0.86	-1.5
2,633,098	-				-2.3
2,633,109	+				-1.3
2,633,109	+				+0.7
2,633,114	+				-0.5
2,633,114	+				+1.3
2,633,122	-				-1.3
2,633,161	+				-0.2
2,633,195	+		Atu2649	0.17	-0.3
2,633,195	+		Atu2649	0.17	-0.8
2,633,195	+		Atu2649	0.17	+0.4
2,633,205	+		Atu2649	0.20	-0.1
2,633,370	-		Atu2649	0.76	-0.8
2,633,416	-				-0.2
2,633,449	-				+0.2
2,633,474	+				+0.5
2,633,565	-				-1.1
2,633,575	-				-0.2
2,633,686	-		Atu2650	0.16	-1.0
2,633,903	-		Atu2650	0.38	+1.1
2,633,948	+		Atu2650	0.43	-1.0
2,633,948	+		Atu2650	0.43	-1.2
2,633,948	+		Atu2650	0.43	-1.3
2,633,963	-		Atu2650	0.44	-0.6
2,634,038	+		Atu2650	0.52	+0.1
2,634,111	+		Atu2650	0.59	-1.0
2,634,119	-		Atu2650	0.60	-0.0
2,634,138	-		Atu2650	0.62	-0.4
2,634,235	+		Atu2650	0.72	-1.6
2,634,235	+		Atu2650	0.72	+0.6
2,634,243	-		Atu2650	0.73	-0.7
2,634,243	-		Atu2650	0.73	-1.0
2,634,243	-		Atu2650	0.73	-1.0
2,634,303	+		Atu2650	0.79	-1.3
2,634,340	+		Atu2650	0.83	-0.6
2,634,340	+		Atu2650	0.83	-0.7
2,634,348	-		Atu2650	0.83	-0.9
2,634,364	+		Atu2650	0.85	+0.5
2,634,464	+				-0.3
2,634,464	+				-1.1