Strain Fitness in Agrobacterium fabrum C58 around Atu2644

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2643 and Atu2644 are separated by 7 nucleotidesAtu2644 and Atu2645 are separated by 12 nucleotidesAtu2645 and Atu2646 are separated by 296 nucleotides Atu2643: Atu2643 - succinate dehydrogenase flavoprotein subunit, at 2,628,735 to 2,630,576 Atu2643 Atu2644: Atu2644 - succinate dehydrogenase hydrophobic membrane anchor, at 2,630,584 to 2,630,964 Atu2644 Atu2645: Atu2645 - succinate dehydrogenase cytochrome B-556 subunit, at 2,630,977 to 2,631,369 Atu2645 Atu2646: Atu2646 - hypothetical protein, at 2,631,666 to 2,632,043 Atu2646 Position (kb) 2630 2631Strain fitness (log2 ratio) -1 0 1at 2631.608 kb on + strandat 2631.709 kb on - strand, within Atu2646at 2631.808 kb on + strand, within Atu2646at 2631.810 kb on + strand, within Atu2646at 2631.950 kb on - strand, within Atu2646

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL
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2,631,608 + -0.5
2,631,709 - Atu2646 0.11 +0.1
2,631,808 + Atu2646 0.38 -0.0
2,631,810 + Atu2646 0.38 +0.1
2,631,950 - Atu2646 0.75 +0.5

Or see this region's nucleotide sequence