Strain Fitness in Agrobacterium fabrum C58 around Atu2483

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,448,975	+		Atu2482	0.30	-3.2
2,448,983	-		Atu2482	0.31	-3.1
2,449,061	+		Atu2482	0.37	-3.1
2,449,090	-		Atu2482	0.40	-3.1
2,449,108	+		Atu2482	0.41	-2.0
2,449,115	+		Atu2482	0.42	-4.1
2,449,123	-		Atu2482	0.42	-3.5
2,449,142	-		Atu2482	0.44	-3.6
2,449,142	-		Atu2482	0.44	-3.6
2,449,158	-		Atu2482	0.45	-3.9
2,449,159	-		Atu2482	0.45	-2.0
2,449,268	+		Atu2482	0.55	-4.1
2,449,340	+		Atu2482	0.61	-1.6
2,449,366	+		Atu2482	0.63	-3.0
2,449,426	-		Atu2482	0.68	-3.2
2,449,429	+		Atu2482	0.68	-2.9
2,449,496	-		Atu2482	0.74	-1.7
2,449,599	+		Atu2482	0.82	-2.5
2,449,599	+		Atu2482	0.82	-3.1
2,449,811	-				-2.2
2,449,859	+				-2.1
2,449,859	+				-0.7
2,449,911	-				-2.5
2,449,921	+				-3.7
2,449,988	+				-2.1
2,450,095	-				-3.4
2,450,173	-				-2.5
2,450,243	-				-3.0
2,450,272	-		Atu2483	0.10	-2.6
2,450,272	-		Atu2483	0.10	-3.0
2,450,368	-		Atu2483	0.13	-2.0
2,450,405	-		Atu2483	0.15	-3.0
2,450,476	-		Atu2483	0.17	-3.2
2,450,511	-		Atu2483	0.18	-2.6
2,450,529	-		Atu2483	0.18	-0.4
2,450,628	+		Atu2483	0.22	-1.8
2,450,745	+		Atu2483	0.25	-3.0
2,450,773	-		Atu2483	0.26	-2.8
2,450,907	-		Atu2483	0.30	-3.5
2,450,994	+		Atu2483	0.33	-2.8
2,451,084	+		Atu2483	0.36	-3.4
2,451,138	+		Atu2483	0.37	-1.4
2,451,146	-		Atu2483	0.38	-1.8
2,451,263	+		Atu2483	0.41	-3.7
2,451,290	-		Atu2483	0.42	-2.0
2,451,348	-		Atu2483	0.44	-2.7
2,451,460	-		Atu2483	0.48	-2.6
2,451,460	-		Atu2483	0.48	-2.8
2,451,538	-		Atu2483	0.50	-3.2
2,451,544	+		Atu2483	0.50	-1.3
2,451,600	-		Atu2483	0.52	-2.7
2,451,628	+		Atu2483	0.53	-2.2
2,451,628	+		Atu2483	0.53	-2.9
2,451,636	-		Atu2483	0.53	-3.7
2,451,636	-		Atu2483	0.53	-3.1
2,451,636	-		Atu2483	0.53	-1.9
2,451,646	-		Atu2483	0.53	-2.4
2,451,664	+		Atu2483	0.54	-0.6
2,451,705	+		Atu2483	0.55	-2.7
2,451,851	-		Atu2483	0.60	-1.5
2,451,879	+		Atu2483	0.61	-1.9
2,451,879	+		Atu2483	0.61	-3.1
2,451,879	-		Atu2483	0.61	-0.9
2,451,895	-		Atu2483	0.61	-2.6
2,451,944	+		Atu2483	0.63	-2.9
2,452,007	-		Atu2483	0.65	-3.1
2,452,080	-		Atu2483	0.67	-2.6
2,452,146	-		Atu2483	0.69	-4.3
2,452,159	+		Atu2483	0.69	-3.0
2,452,167	-		Atu2483	0.70	-1.6
2,452,167	-		Atu2483	0.70	-3.9
2,452,177	+		Atu2483	0.70	-2.9
2,452,208	+		Atu2483	0.71	-3.3
2,452,216	-		Atu2483	0.71	-2.4
2,452,261	+		Atu2483	0.73	+0.2
2,452,346	+		Atu2483	0.75	-2.0
2,452,363	+		Atu2483	0.76	-2.6
2,452,372	+		Atu2483	0.76	-3.8
2,452,402	-		Atu2483	0.77	-2.4
2,452,422	+		Atu2483	0.78	-0.4
2,452,459	+		Atu2483	0.79	-1.3
2,452,472	+		Atu2483	0.79	-1.8
2,452,475	-		Atu2483	0.79	-1.8
2,452,547	-		Atu2483	0.82	-3.6
2,452,589	+		Atu2483	0.83	-3.2
2,452,643	+		Atu2483	0.85	-3.2
2,452,644	-		Atu2483	0.85	-3.0
2,452,914	-				-2.8
2,452,981	+				-2.8
2,453,421	+				-0.2
2,453,487	+		Atu2484	0.31	+0.1
2,453,598	+		Atu2484	0.88	+0.2
2,453,605	+				+0.1
2,453,605	+				-0.1
2,453,676	-				+0.3
2,453,702	+				+0.8
2,453,827	+		Atu2485	0.20	+0.1
2,453,952	+		Atu2485	0.35	+0.4
2,454,045	-		Atu2485	0.46	-0.6
2,454,061	+		Atu2485	0.48	+0.7
2,454,061	+		Atu2485	0.48	-0.3
2,454,069	-		Atu2485	0.49	-0.8
2,454,108	+		Atu2485	0.54	+0.7
2,454,108	+		Atu2485	0.54	-1.0
2,454,116	-		Atu2485	0.55	-0.5