Strain Fitness in Agrobacterium fabrum C58 around Atu2289

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,261,230	-		Atu2288	0.30	+0.2
2,261,239	+		Atu2288	0.31	+0.9
2,261,247	-		Atu2288	0.32	+0.5
2,261,334	+		Atu2288	0.41	-0.0
2,261,353	-		Atu2288	0.44	+0.8
2,261,394	-		Atu2288	0.48	-0.6
2,261,399	-		Atu2288	0.49	+0.2
2,261,399	-		Atu2288	0.49	+0.3
2,261,399	-		Atu2288	0.49	-0.1
2,261,428	+		Atu2288	0.52	+0.1
2,261,428	+		Atu2288	0.52	+0.1
2,261,431	-		Atu2288	0.52	-0.1
2,261,431	-		Atu2288	0.52	-0.3
2,261,444	-		Atu2288	0.54	+0.9
2,261,500	+		Atu2288	0.60	-0.2
2,261,518	+		Atu2288	0.62	+0.1
2,261,583	+		Atu2288	0.69	+1.0
2,261,601	-		Atu2288	0.71	-0.2
2,261,686	-		Atu2288	0.80	-0.4
2,261,755	+		Atu2288	0.88	-0.5
2,261,771	+		Atu2288	0.90	-0.1
2,261,838	+				+0.2
2,261,859	+				+0.5
2,261,869	+				+0.5
2,261,874	+				-0.3
2,261,881	-				-0.0
2,261,881	-				-0.2
2,261,895	+				-0.4
2,262,108	+				-0.5
2,262,117	+				-0.2
2,262,125	-				+1.4
2,262,172	+				-1.3
2,262,172	+				-0.4
2,262,209	+				+0.1
2,262,389	-		Atu2289	0.11	-0.6
2,262,402	-		Atu2289	0.12	-0.7
2,262,458	+		Atu2289	0.14	-1.2
2,262,488	+		Atu2289	0.16	-1.2
2,262,564	-		Atu2289	0.19	-3.6
2,262,721	+		Atu2289	0.26	-1.8
2,262,739	+		Atu2289	0.27	-0.5
2,262,756	+		Atu2289	0.28	-1.1
2,262,756	+		Atu2289	0.28	-1.6
2,262,756	+		Atu2289	0.28	-2.1
2,262,764	-		Atu2289	0.28	-0.9
2,262,764	-		Atu2289	0.28	-1.6
2,262,764	-		Atu2289	0.28	+0.1
2,262,814	+		Atu2289	0.31	-2.3
2,262,842	-		Atu2289	0.32	-1.7
2,262,908	-		Atu2289	0.35	-1.1
2,262,926	+		Atu2289	0.36	+0.5
2,262,936	+		Atu2289	0.36	-1.6
2,262,944	-		Atu2289	0.36	+0.7
2,263,004	+		Atu2289	0.39	-1.8
2,263,034	-		Atu2289	0.41	-1.1
2,263,127	-		Atu2289	0.45	-0.3
2,263,147	-		Atu2289	0.46	-2.3
2,263,147	-		Atu2289	0.46	-1.0
2,263,242	-		Atu2289	0.50	-1.8
2,263,257	-		Atu2289	0.51	-1.0
2,263,326	-		Atu2289	0.54	-2.1
2,263,331	+		Atu2289	0.54	-2.1
2,263,331	+		Atu2289	0.54	-0.8
2,263,373	+		Atu2289	0.56	-1.6
2,263,403	-		Atu2289	0.57	-1.0
2,263,403	-		Atu2289	0.57	-1.1
2,263,643	+		Atu2289	0.68	-1.2
2,263,762	+		Atu2289	0.74	+1.5
2,263,840	-		Atu2289	0.77	-1.5
2,263,851	+		Atu2289	0.78	-1.4
2,263,915	+		Atu2289	0.81	-1.1
2,263,978	-		Atu2289	0.84	-1.4
2,263,989	+		Atu2289	0.84	-0.7
2,264,012	+		Atu2289	0.85	-1.5
2,264,020	-		Atu2289	0.86	-1.5
2,264,031	+		Atu2289	0.86	-2.8
2,264,045	-		Atu2289	0.87	+0.1
2,264,105	+		Atu2289	0.89	-0.9
2,264,113	-		Atu2289	0.90	-1.2
2,264,113	-		Atu2289	0.90	+0.5
2,264,184	+				-2.1
2,264,224	+				-3.5
2,264,229	+				-2.3
2,264,262	+				-2.5
2,264,298	-				-0.1
2,264,319	+				+0.8
2,264,319	+				+0.1
2,264,319	+				+0.3
2,264,321	-				+0.4
2,264,327	-				+0.1
2,264,344	+				+0.0
2,264,376	-				+0.2
2,264,381	+				+0.5
2,264,677	+		Atu2290	0.67	+0.0
2,264,692	+		Atu2290	0.70	-0.6
2,264,700	-		Atu2290	0.72	-0.5
2,264,720	+		Atu2290	0.76	-0.0
2,264,723	-		Atu2290	0.76	-0.2
2,264,728	-		Atu2290	0.77	+0.0
2,264,728	-		Atu2290	0.77	-0.5
2,264,811	+				+0.8
2,264,847	+				+0.1
2,264,922	+				-0.4
2,264,927	+				+0.2
2,264,946	+		Atu2291	0.11	+0.2
2,264,954	-		Atu2291	0.12	-0.0
2,264,954	-		Atu2291	0.12	-1.1
2,264,967	-		Atu2291	0.13	+0.0
2,265,198	+		Atu2291	0.38	-1.6
2,265,201	-		Atu2291	0.38	-0.8
2,265,201	-		Atu2291	0.38	+0.3
2,265,203	+		Atu2291	0.38	-0.3