Strain Fitness in Agrobacterium fabrum C58 around Atu2061

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
2,024,116	-				+0.0
2,024,169	+		Atu2060	0.14	+0.2
2,024,177	-		Atu2060	0.15	+0.7
2,024,205	-		Atu2060	0.18	+1.5
2,024,239	-		Atu2060	0.22	+0.0
2,024,239	-		Atu2060	0.22	-0.4
2,024,239	-		Atu2060	0.22	+0.6
2,024,241	+		Atu2060	0.22	+0.6
2,024,302	+		Atu2060	0.29	+0.2
2,024,349	+		Atu2060	0.34	+0.1
2,024,528	+		Atu2060	0.53	-0.1
2,024,530	+		Atu2060	0.53	-0.1
2,024,530	+		Atu2060	0.53	-0.8
2,024,536	-		Atu2060	0.54	-0.7
2,024,538	-		Atu2060	0.54	+0.1
2,024,734	+		Atu2060	0.75	-1.1
2,024,861	+		Atu2060	0.89	+0.5
2,024,956	+				+1.3
2,024,956	+				-0.9
2,024,956	+				-0.1
2,024,956	+				+0.5
2,024,964	-				+0.0
2,024,964	-				+0.0
2,024,964	-				-0.2
2,025,059	-		Atu2061	0.11	+0.9
2,025,147	+		Atu2061	0.22	-1.1
2,025,169	-		Atu2061	0.24	-0.2
2,025,271	+		Atu2061	0.36	-0.5
2,025,271	+		Atu2061	0.36	+0.6
2,025,313	+		Atu2061	0.41	+0.4
2,025,315	+		Atu2061	0.41	+1.1
2,025,324	+		Atu2061	0.42	-1.1
2,025,340	+		Atu2061	0.44	-0.0
2,025,343	-		Atu2061	0.44	+1.0
2,025,348	-		Atu2061	0.45	+0.5
2,025,487	-		Atu2061	0.61	+0.2
2,025,538	+		Atu2061	0.67	+0.6
2,025,571	-		Atu2061	0.71	+0.1
2,025,573	-		Atu2061	0.71	-0.0
2,025,681	-		Atu2061	0.84	+0.1
2,025,803	+				-0.1
2,025,913	+				+0.5
2,026,054	-		Atu2062	0.25	-0.6
2,026,086	-		Atu2062	0.32	-0.2
2,026,091	-		Atu2062	0.33	+0.0
2,026,154	-		Atu2062	0.47	+0.2
2,026,154	-		Atu2062	0.47	-0.6
2,026,235	-		Atu2062	0.64	-0.2
2,026,243	-		Atu2062	0.66	+0.6
2,026,255	-		Atu2062	0.69	-0.1
2,026,324	+		Atu2062	0.84	+0.3
2,026,324	-		Atu2062	0.84	+1.0
2,026,346	+		Atu2062	0.88	+0.9
2,026,346	+		Atu2062	0.88	+0.7
2,026,354	-				+0.1
2,026,361	+				+0.2
2,026,410	+				-0.0
2,026,418	-				-0.2
2,026,483	-		Atu2063	0.21	-0.0
2,026,483	-		Atu2063	0.21	+0.0