Strain Fitness in Agrobacterium fabrum C58 around Atu1983

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,947,528	-		Atu1981	0.35	-0.5
1,947,529	+		Atu1981	0.35	+1.3
1,947,534	+		Atu1981	0.37	+0.3
1,947,542	+		Atu1981	0.38	-0.7
1,947,574	+		Atu1981	0.46	+0.4
1,947,575	-		Atu1981	0.46	+0.3
1,947,601	-		Atu1981	0.52	+0.3
1,947,606	+		Atu1981	0.53	+0.3
1,947,614	-		Atu1981	0.55	-0.4
1,947,614	-		Atu1981	0.55	-0.0
1,947,644	+		Atu1981	0.62	+0.1
1,947,644	+		Atu1981	0.62	-0.5
1,947,644	+		Atu1981	0.62	+0.0
1,947,652	-		Atu1981	0.64	+0.5
1,947,675	-		Atu1981	0.69	-0.2
1,947,724	-		Atu1981	0.81	+0.2
1,947,821	-				-0.0
1,947,881	+				-1.2
1,947,938	+				-0.1
1,948,055	+		Atu1982	0.22	+0.1
1,948,065	-		Atu1982	0.24	+0.4
1,948,075	-		Atu1982	0.26	+0.6
1,948,152	+		Atu1982	0.40	+0.2
1,948,239	-		Atu1982	0.56	-0.9
1,948,250	+		Atu1982	0.58	+0.7
1,948,263	-		Atu1982	0.61	+0.4
1,948,300	+		Atu1982	0.68	+0.8
1,948,308	-		Atu1982	0.69	-0.3
1,948,318	-		Atu1982	0.71	-0.1
1,948,350	+		Atu1982	0.77	-0.9
1,948,373	+		Atu1982	0.81	+0.2
1,948,376	-		Atu1982	0.82	-0.4
1,948,378	+		Atu1982	0.82	+0.3
1,948,378	+		Atu1982	0.82	-0.2
1,948,402	+		Atu1982	0.86	-1.0
1,948,403	-		Atu1982	0.87	-1.0
1,948,460	-				-0.1
1,948,538	-				+0.1
1,948,676	-		Atu1983	0.29	-0.1
1,948,750	-		Atu1983	0.39	-1.3
1,948,770	+		Atu1983	0.42	-0.6
1,948,778	-		Atu1983	0.43	-0.5
1,948,984	+		Atu1983	0.72	-1.4
1,948,992	-		Atu1983	0.73	-2.2
1,949,111	+		Atu1983	0.90	-1.3
1,949,216	+				+0.3
1,949,243	+				+0.1
1,949,273	-				-0.2
1,949,331	-				-0.2
1,949,343	-				+0.7
1,949,349	+				-1.2
1,949,380	-		Atu1984	0.11	-0.6
1,949,531	-		Atu1984	0.25	+0.4
1,949,531	-		Atu1984	0.25	+0.3
1,949,642	-		Atu1984	0.36	-0.4
1,949,700	+		Atu1984	0.42	-0.4
1,949,700	+		Atu1984	0.42	+0.2
1,949,708	-		Atu1984	0.42	-0.1
1,949,708	-		Atu1984	0.42	+0.3
1,949,722	+		Atu1984	0.44	+0.7
1,949,937	-		Atu1984	0.64	+0.6
1,949,937	-		Atu1984	0.64	+0.1
1,950,041	+		Atu1984	0.74	+0.0
1,950,159	+		Atu1984	0.86	-0.4