Strain Fitness in Agrobacterium fabrum C58 around Atu1907

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,883,467	+				-0.2
1,883,472	-				+0.2
1,883,472	-				-0.1
1,883,521	-				+0.2
1,883,521	-				-0.4
1,883,523	+				-0.1
1,883,597	+				+0.3
1,883,717	+		Atu1906	0.12	-0.9
1,883,902	+		Atu1906	0.37	-1.0
1,884,063	+		Atu1906	0.58	-0.8
1,884,111	+		Atu1906	0.64	-1.1
1,884,119	-		Atu1906	0.65	-0.7
1,884,285	-		Atu1906	0.87	-0.5
1,884,315	+				-0.6
1,884,321	-				-1.4
1,884,474	+		Atu1907	0.10	-1.0
1,884,691	-		Atu1907	0.34	-0.6
1,884,728	+		Atu1907	0.38	-0.1
1,884,729	-		Atu1907	0.38	-1.7
1,884,803	+		Atu1907	0.46	-0.2
1,884,844	+		Atu1907	0.50	-0.8
1,884,844	+		Atu1907	0.50	-1.6
1,884,956	+		Atu1907	0.62	-0.3
1,884,987	-		Atu1907	0.65	-0.5
1,885,016	+		Atu1907	0.69	-0.9
1,885,016	+		Atu1907	0.69	-1.3
1,885,024	-		Atu1907	0.69	-0.7
1,885,024	-		Atu1907	0.69	-0.8
1,885,034	-		Atu1907	0.71	+0.1
1,885,056	-		Atu1907	0.73	-0.0
1,885,219	+				-0.9
1,885,227	-				-0.4
1,885,378	+				+0.9
1,885,400	-				+0.1
1,885,458	-				-0.5
1,885,494	+		Atu1908	0.10	+0.1
1,885,546	+		Atu1908	0.16	+0.1
1,885,551	+		Atu1908	0.17	+0.4
1,885,551	+		Atu1908	0.17	-1.2
1,885,559	-		Atu1908	0.18	-0.5
1,885,596	+		Atu1908	0.23	+0.4
1,885,604	-		Atu1908	0.23	-0.2
1,885,616	+		Atu1908	0.25	+0.1
1,885,616	+		Atu1908	0.25	-0.7
1,885,624	-		Atu1908	0.26	+0.1
1,885,648	+		Atu1908	0.29	+0.1
1,885,996	-		Atu1908	0.71	-0.4
1,886,069	-		Atu1908	0.80	-0.2
1,886,079	+		Atu1908	0.81	+0.2
1,886,097	-		Atu1908	0.83	-0.4
1,886,097	-		Atu1908	0.83	-0.5
1,886,106	+		Atu1908	0.85	+1.0
1,886,108	+		Atu1908	0.85	+1.6
1,886,157	-				-0.6