Strain Fitness in Agrobacterium fabrum C58 around Atu1780

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,765,618	-		Atu1778	0.89	-0.9
1,765,763	-				+0.5
1,765,795	+				+0.7
1,765,826	+				-0.9
1,765,861	+				+0.0
1,766,035	+		Atu1779	0.13	-0.1
1,766,316	-				-0.6
1,766,323	-				+0.7
1,766,337	-				-0.2
1,766,466	+				+0.4
1,766,524	+				-3.5
1,766,539	-				-0.4
1,766,544	-				-2.5
1,766,600	-				-0.7
1,766,638	+				-1.7
1,766,950	+		Atu1780	0.22	-1.2
1,766,958	-		Atu1780	0.22	-1.8
1,767,059	+		Atu1780	0.27	+0.2
1,767,087	+		Atu1780	0.28	-0.8
1,767,235	-		Atu1780	0.35	-1.5
1,767,235	-		Atu1780	0.35	-0.8
1,767,278	-		Atu1780	0.37	-0.7
1,767,325	-		Atu1780	0.39	-0.8
1,767,349	-		Atu1780	0.41	-2.1
1,767,499	+		Atu1780	0.48	-1.6
1,767,499	+		Atu1780	0.48	-0.7
1,767,507	-		Atu1780	0.48	-0.3
1,767,551	-		Atu1780	0.50	-1.1
1,767,558	-		Atu1780	0.51	-0.2
1,767,705	+		Atu1780	0.58	+0.1
1,767,768	+		Atu1780	0.60	-2.2
1,767,797	+		Atu1780	0.62	-2.1
1,767,797	+		Atu1780	0.62	+0.6
1,767,809	-		Atu1780	0.62	-2.6
1,767,863	+		Atu1780	0.65	-0.7
1,767,931	+		Atu1780	0.68	-1.7
1,767,948	+		Atu1780	0.69	+1.2
1,767,986	+		Atu1780	0.71	-1.0
1,767,996	+		Atu1780	0.71	-2.7
1,768,043	-		Atu1780	0.74	-1.7
1,768,054	-		Atu1780	0.74	-0.8
1,768,211	+		Atu1780	0.82	-0.1
1,768,278	+		Atu1780	0.85	-0.6
1,768,281	+		Atu1780	0.85	-1.8
1,768,284	-		Atu1780	0.85	-1.7
1,768,291	-		Atu1780	0.85	-1.0
1,768,375	-		Atu1780	0.89	-1.4
1,768,447	+				-0.5
1,768,494	-				-0.2
1,768,505	+				-1.4
1,768,529	+				-0.6
1,768,553	+				-0.2
1,768,609	+				-0.1
1,768,609	+				+0.5
1,768,619	+				+0.0
1,768,701	-		Atu1781	0.33	-0.1
1,768,785	+		Atu1781	0.63	-0.1
1,768,816	-		Atu1781	0.75	-0.2
1,768,858	-				-1.1
1,768,863	-				-0.2
1,768,891	-				-0.2
1,768,891	-				+1.3
1,768,905	+				+0.0
1,768,913	-				+0.2
1,768,925	+				-0.2
1,769,045	+		Atu1782	0.46	+0.3
1,769,120	+		Atu1782	0.71	+0.2
1,769,128	-		Atu1782	0.74	-0.5
1,769,164	-		Atu1782	0.87	-0.5
1,769,541	+				-0.4