Strain Fitness in Agrobacterium fabrum C58 around Atu1455

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,450,559	+		Atu1454	0.47	-1.6
1,450,695	+		Atu1454	0.56	-0.8
1,450,824	+		Atu1454	0.65	-0.5
1,451,065	+		Atu1454	0.81	-0.2
1,451,211	+				-0.6
1,451,225	+				+0.0
1,451,243	-				-0.0
1,451,280	-				-0.1
1,451,301	-				-0.1
1,451,340	+				+1.5
1,451,340	+				-0.1
1,451,381	+		Atu1455	0.17	-0.8
1,451,505	+		Atu1455	0.56	-0.8
1,451,541	+		Atu1455	0.67	-0.9
1,451,549	-		Atu1455	0.70	+0.5
1,451,600	-		Atu1455	0.86	-0.3
1,451,688	-				-1.0
1,451,755	+				-0.4
1,451,755	+				+0.4
1,451,796	-				-0.3
1,451,803	+				-1.9
1,451,811	-				-0.3
1,451,825	+		Atu1456	0.10	-0.5
1,451,978	-		Atu1456	0.20	-1.4
1,451,980	+		Atu1456	0.20	+0.5
1,452,016	-		Atu1456	0.22	-0.1
1,452,169	-		Atu1456	0.31	-0.4
1,452,169	-		Atu1456	0.31	-0.1
1,452,189	+		Atu1456	0.32	+0.5
1,452,234	+		Atu1456	0.35	+0.2
1,452,267	+		Atu1456	0.37	-0.6
1,452,275	-		Atu1456	0.37	-0.9
1,452,282	-		Atu1456	0.38	+0.6
1,452,332	+		Atu1456	0.41	-2.3
1,452,340	-		Atu1456	0.41	+0.4
1,452,409	-		Atu1456	0.45	-0.3
1,452,602	-		Atu1456	0.57	-0.2
1,452,642	+		Atu1456	0.59	-0.3