Strain Fitness in Agrobacterium fabrum C58 around Atu1141

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,128,629	-		Atu1139	0.59	-1.3
1,128,636	-		Atu1139	0.61	-0.2
1,128,698	+		Atu1139	0.74	-0.2
1,128,705	-		Atu1139	0.75	+0.0
1,128,741	+		Atu1139	0.83	-0.1
1,128,772	+		Atu1139	0.89	+0.5
1,128,777	+				+0.0
1,128,777	+				+2.5
1,128,782	-				+0.3
1,128,845	+				-0.0
1,128,853	-				-0.2
1,129,076	-		Atu1140	0.20	-0.5
1,129,117	-		Atu1140	0.27	-0.4
1,129,144	+		Atu1140	0.31	-0.2
1,129,240	-		Atu1140	0.47	-1.0
1,129,550	-				-1.3
1,129,550	-				-0.7
1,129,605	-				-0.7
1,129,640	-				-0.5
1,129,738	-		Atu1141	0.10	-0.4
1,130,043	-		Atu1141	0.39	-1.4
1,130,114	+		Atu1141	0.45	-0.2
1,130,114	+		Atu1141	0.45	-0.9
1,130,214	-		Atu1141	0.55	-0.3
1,130,396	-		Atu1141	0.72	-0.9
1,130,465	-		Atu1141	0.78	-0.5
1,130,514	+		Atu1141	0.83	-0.3
1,130,744	+				-0.9
1,130,828	+				-0.7
1,130,828	+				+0.5
1,130,836	-				-0.1
1,130,888	+				-0.6
1,130,901	+				-0.0
1,130,909	+				-0.1
1,130,917	-				-0.2
1,130,920	+				+0.7
1,130,927	+				+0.7
1,130,943	+				+0.6