Strain Fitness in Agrobacterium fabrum C58 around Atu1129

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
1,116,587	+		Atu1127	0.42	-1.0
1,116,595	-		Atu1127	0.45	+0.8
1,117,651	+		Atu1129	0.12	-2.8
1,117,777	-		Atu1129	0.18	-1.0
1,117,829	-		Atu1129	0.21	-2.8
1,117,843	-		Atu1129	0.22	-1.2
1,117,843	-		Atu1129	0.22	-2.4
1,117,880	-		Atu1129	0.24	-2.5
1,117,957	-		Atu1129	0.28	+0.7
1,118,160	+		Atu1129	0.38	-2.5
1,118,168	-		Atu1129	0.39	-1.1
1,118,399	+		Atu1129	0.51	-2.6
1,118,407	-		Atu1129	0.51	-2.4
1,118,417	-		Atu1129	0.52	-5.1
1,118,428	-		Atu1129	0.52	-1.4
1,118,493	-		Atu1129	0.55	-2.7
1,118,658	+		Atu1129	0.64	-2.9
1,118,674	-		Atu1129	0.65	-2.9
1,118,795	+		Atu1129	0.71	-2.9
1,118,802	-		Atu1129	0.71	-1.4
1,118,808	+		Atu1129	0.72	-5.5
1,118,857	-		Atu1129	0.74	-1.2
1,119,096	+		Atu1129	0.87	-3.1
1,119,174	+				-5.2
1,119,191	+				-4.7
1,119,346	+				-0.4
1,119,354	+				+1.5
1,119,359	+				-0.8
1,119,485	+				-1.3
1,119,493	-				-0.1
1,119,493	-				-1.0
1,119,639	+		Atu1130	0.22	+0.1
1,119,669	+		Atu1130	0.26	-0.3
1,119,682	-		Atu1130	0.28	-0.7
1,119,688	+		Atu1130	0.28	-0.3
1,119,696	-		Atu1130	0.29	-1.2
1,119,715	-		Atu1130	0.32	-0.8
1,119,727	-		Atu1130	0.33	-0.2
1,119,803	+		Atu1130	0.43	+0.7
1,119,848	+		Atu1130	0.49	-1.3
1,119,990	-		Atu1130	0.67	+0.5
1,120,013	+		Atu1130	0.69	+0.2
1,120,021	-		Atu1130	0.70	+0.0
1,120,151	-		Atu1130	0.87	-0.1
1,120,255	-				+0.3
1,120,292	+				-0.1