Strain Fitness in Agrobacterium fabrum C58 around Atu0518

Experiment: R2A with Nitrofurantoin 0.4 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nitrofurantoin 0.4 mg/mL
507,728	+		Atu0517	0.57	-0.3
507,759	-		Atu0517	0.58	-0.8
507,778	-		Atu0517	0.59	+0.0
507,797	+		Atu0517	0.60	-0.9
507,826	-		Atu0517	0.61	-0.8
507,842	+		Atu0517	0.62	+1.7
507,850	-		Atu0517	0.62	-1.1
507,850	-		Atu0517	0.62	-0.9
507,907	+		Atu0517	0.65	+0.3
507,914	-		Atu0517	0.65	-0.6
507,925	+		Atu0517	0.66	-1.2
507,943	-		Atu0517	0.66	-0.3
508,042	-		Atu0517	0.71	-1.1
508,146	+		Atu0517	0.76	-0.8
508,235	-		Atu0517	0.80	-0.9
508,245	+		Atu0517	0.80	-0.8
508,245	+		Atu0517	0.80	-1.0
508,250	-		Atu0517	0.80	+0.1
508,297	+		Atu0517	0.82	-1.1
508,335	-		Atu0517	0.84	-0.7
508,341	+		Atu0517	0.84	-1.7
508,366	+		Atu0517	0.85	+0.2
508,429	-		Atu0517	0.88	+0.1
508,435	+		Atu0517	0.89	-0.8
508,442	+		Atu0517	0.89	+0.4
508,479	+				-0.6
508,591	+				-1.3
508,593	+				-0.8
508,686	+				+0.3
508,693	+				-0.1
508,813	-		Atu0518	0.12	-0.7
508,845	-		Atu0518	0.16	+0.7
508,928	-		Atu0518	0.25	-0.6
509,027	-		Atu0518	0.36	-0.6
509,034	+		Atu0518	0.37	-1.4
509,076	+		Atu0518	0.41	-0.5
509,211	+		Atu0518	0.56	-0.5
509,224	-		Atu0518	0.58	-0.2
509,268	-		Atu0518	0.62	-1.0
509,350	+		Atu0518	0.71	+0.8
509,357	-		Atu0518	0.72	-0.7
509,421	+		Atu0518	0.79	-1.0
509,450	+		Atu0518	0.82	-0.5
509,498	+		Atu0518	0.88	-1.0
509,498	+		Atu0518	0.88	-0.5
509,498	+		Atu0518	0.88	-0.5
509,498	+		Atu0518	0.88	+1.6
509,498	+		Atu0518	0.88	-1.3
509,506	-		Atu0518	0.89	+0.4
509,506	-		Atu0518	0.89	-0.2
509,506	-		Atu0518	0.89	-0.2
509,544	+				-2.5
509,603	+				-0.1
509,611	-				-0.6
509,662	+				+0.4
509,674	+				-0.3
509,682	-				-1.4
509,722	+		Atu0519	0.11	-0.4
509,826	-		Atu0519	0.21	+1.8
509,937	+		Atu0519	0.31	-0.2
509,974	+		Atu0519	0.35	-1.7
509,975	+		Atu0519	0.35	-0.7
509,982	-		Atu0519	0.36	-0.5
510,083	-		Atu0519	0.45	-0.1
510,083	-		Atu0519	0.45	-1.5
510,126	+		Atu0519	0.49	-1.5
510,215	+		Atu0519	0.58	+2.1
510,217	+		Atu0519	0.58	-0.3
510,283	+		Atu0519	0.64	-0.4
510,291	-		Atu0519	0.65	+0.1
510,291	-		Atu0519	0.65	-0.8
510,296	-		Atu0519	0.65	-0.6
510,330	+		Atu0519	0.69	-0.5
510,387	+		Atu0519	0.74	-0.8
510,441	+		Atu0519	0.79	-0.3
510,469	-		Atu0519	0.82	-0.1
510,513	+		Atu0519	0.86	-0.8
510,513	+		Atu0519	0.86	-0.1
510,521	-		Atu0519	0.87	-0.8
510,550	-		Atu0519	0.89	-0.3
510,572	-				-1.3
510,579	+				-0.4
510,588	+				-1.2
510,596	+				-0.7