Experiment: R2A with Nitrofurantoin 0.4 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0189 and Atu0190 are separated by 5 nucleotides
Atu0189: Atu0189 - ABC transporter, membrane spanning protein (peptide), at 192,608 to 193,753
Atu0189
Atu0190: Atu0190 - ABC transporter, nucleotide binding/ATPase protein (peptide), at 193,759 to 195,399
Atu0190
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 192.959 kb on - strand, within Atu0189 at 193.621 kb on + strand, within Atu0189 at 193.635 kb on - strand, within Atu0189 at 193.647 kb on + strand at 193.647 kb on + strand at 193.655 kb on - strand at 193.725 kb on + strand at 193.735 kb on + strand at 193.825 kb on + strand at 193.864 kb on - strand at 194.003 kb on + strand, within Atu0190 at 194.025 kb on + strand, within Atu0190 at 194.362 kb on - strand, within Atu0190 at 194.388 kb on + strand, within Atu0190 at 194.466 kb on + strand, within Atu0190 at 194.497 kb on - strand, within Atu0190 at 194.507 kb on - strand, within Atu0190 at 194.520 kb on + strand, within Atu0190 at 194.529 kb on - strand, within Atu0190 at 194.687 kb on + strand, within Atu0190 at 194.704 kb on + strand, within Atu0190 at 194.895 kb on - strand, within Atu0190 at 194.997 kb on + strand, within Atu0190 at 195.136 kb on + strand, within Atu0190 at 195.146 kb on - strand, within Atu0190 at 195.146 kb on - strand, within Atu0190 at 195.199 kb on - strand, within Atu0190 at 195.218 kb on + strand, within Atu0190 at 195.223 kb on + strand, within Atu0190 at 195.280 kb on + strand at 195.327 kb on + strand at 195.327 kb on + strand at 195.335 kb on - strand at 195.335 kb on - strand at 195.457 kb on + strand at 195.462 kb on + strand at 195.482 kb on + strand at 195.596 kb on + strand at 195.604 kb on - strand at 195.639 kb on + strand at 195.639 kb on + strand at 195.647 kb on - strand at 195.673 kb on + strand at 195.673 kb on + strand at 195.698 kb on + strand at 195.699 kb on - strand at 195.793 kb on + strand at 195.843 kb on - strand at 195.851 kb on - strand at 195.921 kb on + strand at 196.015 kb on + strand at 196.020 kb on + strand at 196.083 kb on - strand at 196.085 kb on - strand at 196.126 kb on + strand at 196.128 kb on + strand at 196.142 kb on + strand at 196.167 kb on + strand at 196.194 kb on + strand at 196.200 kb on - strand at 196.200 kb on - strand at 196.200 kb on - strand at 196.274 kb on + strand at 196.275 kb on + strand at 196.285 kb on + strand at 196.345 kb on - strand at 196.347 kb on + strand at 196.355 kb on - strand at 196.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nitrofurantoin 0.4 mg/mL remove 192,959 - Atu0189 0.31 -0.7 193,621 + Atu0189 0.88 -0.2 193,635 - Atu0189 0.90 -1.2 193,647 + +1.3 193,647 + -0.3 193,655 - -3.6 193,725 + -0.1 193,735 + +0.7 193,825 + -1.0 193,864 - -1.0 194,003 + Atu0190 0.15 -0.5 194,025 + Atu0190 0.16 -0.2 194,362 - Atu0190 0.37 +1.3 194,388 + Atu0190 0.38 -1.0 194,466 + Atu0190 0.43 -0.0 194,497 - Atu0190 0.45 -2.1 194,507 - Atu0190 0.46 -0.9 194,520 + Atu0190 0.46 -0.2 194,529 - Atu0190 0.47 +0.4 194,687 + Atu0190 0.57 +0.8 194,704 + Atu0190 0.58 -0.7 194,895 - Atu0190 0.69 -0.9 194,997 + Atu0190 0.75 +0.9 195,136 + Atu0190 0.84 -1.2 195,146 - Atu0190 0.85 -1.1 195,146 - Atu0190 0.85 -0.9 195,199 - Atu0190 0.88 -1.7 195,218 + Atu0190 0.89 -0.6 195,223 + Atu0190 0.89 -0.5 195,280 + +1.4 195,327 + +0.1 195,327 + +0.5 195,335 - -1.8 195,335 - +0.1 195,457 + -0.3 195,462 + +0.2 195,482 + +0.1 195,596 + +0.1 195,604 - -0.2 195,639 + -0.3 195,639 + -0.1 195,647 - -0.4 195,673 + -0.1 195,673 + -0.6 195,698 + +0.3 195,699 - -0.1 195,793 + +0.1 195,843 - +0.2 195,851 - +1.8 195,921 + -0.1 196,015 + +0.6 196,020 + -0.6 196,083 - +0.4 196,085 - -0.2 196,126 + -0.1 196,128 + +0.4 196,142 + +0.4 196,167 + +0.1 196,194 + +0.7 196,200 - -0.4 196,200 - +0.8 196,200 - +2.1 196,274 + +0.3 196,275 + -0.3 196,285 + -0.8 196,345 - -0.3 196,347 + +1.0 196,355 - +0.0 196,362 - -0.1
Or see this region's nucleotide sequence