Experiment: R2A with Rifampicin 0.0007 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0575 and Atu0576 are separated by 3 nucleotides Atu0576 and Atu0577 are separated by 34 nucleotides Atu0577 and Atu0578 overlap by 4 nucleotides Atu0578 and Atu0579 overlap by 10 nucleotides
Atu0575: Atu0575 - flagellar hook associated protein, at 560,238 to 561,716
Atu0575
Atu0576: Atu0576 - flagellar hook-associated protein, at 561,720 to 562,823
Atu0576
Atu0577: Atu0577 - FLAF protein, at 562,858 to 563,202
Atu0577
Atu0578: Atu0578 - FlbT post-transcriptional regulator of flagellin, at 563,199 to 563,648
Atu0578
Atu0579: Atu0579 - hook formation protein, at 563,639 to 564,112
Atu0579
Position (kb) 561
562
563 Strain fitness (log2 ratio) -1
0
1
2 at 560.731 kb on - strand, within Atu0575 at 560.752 kb on - strand, within Atu0575 at 560.801 kb on - strand, within Atu0575 at 560.894 kb on + strand, within Atu0575 at 560.916 kb on - strand, within Atu0575 at 560.918 kb on + strand, within Atu0575 at 560.918 kb on + strand, within Atu0575 at 560.918 kb on + strand, within Atu0575 at 560.918 kb on + strand, within Atu0575 at 560.926 kb on - strand, within Atu0575 at 560.926 kb on - strand, within Atu0575 at 560.984 kb on - strand, within Atu0575 at 561.104 kb on - strand, within Atu0575 at 561.126 kb on + strand, within Atu0575 at 561.129 kb on + strand, within Atu0575 at 561.192 kb on - strand, within Atu0575 at 561.238 kb on + strand, within Atu0575 at 561.265 kb on + strand, within Atu0575 at 561.273 kb on - strand, within Atu0575 at 561.426 kb on + strand, within Atu0575 at 561.583 kb on - strand at 561.601 kb on + strand at 561.606 kb on + strand at 561.623 kb on + strand at 561.763 kb on - strand at 561.764 kb on + strand at 561.764 kb on + strand at 561.764 kb on + strand at 561.772 kb on - strand at 561.774 kb on + strand at 561.777 kb on - strand at 561.844 kb on + strand, within Atu0576 at 561.882 kb on - strand, within Atu0576 at 561.944 kb on + strand, within Atu0576 at 561.963 kb on + strand, within Atu0576 at 561.971 kb on - strand, within Atu0576 at 561.977 kb on + strand, within Atu0576 at 562.005 kb on + strand, within Atu0576 at 562.013 kb on - strand, within Atu0576 at 562.019 kb on + strand, within Atu0576 at 562.138 kb on + strand, within Atu0576 at 562.201 kb on + strand, within Atu0576 at 562.274 kb on + strand, within Atu0576 at 562.427 kb on - strand, within Atu0576 at 562.483 kb on + strand, within Atu0576 at 562.760 kb on + strand at 562.825 kb on - strand at 562.842 kb on + strand at 562.921 kb on + strand, within Atu0577 at 562.929 kb on - strand, within Atu0577 at 562.970 kb on + strand, within Atu0577 at 562.978 kb on - strand, within Atu0577 at 563.122 kb on + strand, within Atu0577 at 563.127 kb on + strand, within Atu0577 at 563.214 kb on - strand at 563.333 kb on + strand, within Atu0578 at 563.415 kb on + strand, within Atu0578 at 563.537 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.674 kb on + strand at 563.674 kb on + strand at 563.674 kb on + strand at 563.677 kb on - strand at 563.704 kb on + strand, within Atu0579 at 563.728 kb on + strand, within Atu0579 at 563.728 kb on - strand, within Atu0579 at 563.774 kb on + strand, within Atu0579 at 563.778 kb on + strand, within Atu0579
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Rifampicin 0.0007 mM remove 560,731 - Atu0575 0.33 +0.5 560,752 - Atu0575 0.35 +1.0 560,801 - Atu0575 0.38 +1.6 560,894 + Atu0575 0.44 +0.9 560,916 - Atu0575 0.46 +0.3 560,918 + Atu0575 0.46 +1.0 560,918 + Atu0575 0.46 +1.0 560,918 + Atu0575 0.46 +1.0 560,918 + Atu0575 0.46 +1.2 560,926 - Atu0575 0.47 +0.9 560,926 - Atu0575 0.47 -0.5 560,984 - Atu0575 0.50 +1.1 561,104 - Atu0575 0.59 +1.5 561,126 + Atu0575 0.60 +1.0 561,129 + Atu0575 0.60 +1.9 561,192 - Atu0575 0.65 +1.1 561,238 + Atu0575 0.68 +1.0 561,265 + Atu0575 0.69 +1.2 561,273 - Atu0575 0.70 +1.5 561,426 + Atu0575 0.80 +0.9 561,583 - +0.6 561,601 + +1.0 561,606 + +0.9 561,623 + +1.0 561,763 - +0.6 561,764 + +0.6 561,764 + +0.3 561,764 + +1.0 561,772 - +1.3 561,774 + +1.4 561,777 - +1.4 561,844 + Atu0576 0.11 +0.9 561,882 - Atu0576 0.15 +1.5 561,944 + Atu0576 0.20 +1.3 561,963 + Atu0576 0.22 +0.8 561,971 - Atu0576 0.23 +0.9 561,977 + Atu0576 0.23 +0.7 562,005 + Atu0576 0.26 +1.6 562,013 - Atu0576 0.27 +1.2 562,019 + Atu0576 0.27 +1.0 562,138 + Atu0576 0.38 +1.7 562,201 + Atu0576 0.44 +1.1 562,274 + Atu0576 0.50 +0.9 562,427 - Atu0576 0.64 +0.9 562,483 + Atu0576 0.69 +1.2 562,760 + +0.8 562,825 - +1.1 562,842 + +0.4 562,921 + Atu0577 0.18 +0.7 562,929 - Atu0577 0.21 +0.9 562,970 + Atu0577 0.32 +0.8 562,978 - Atu0577 0.35 +1.4 563,122 + Atu0577 0.77 +1.0 563,127 + Atu0577 0.78 +1.5 563,214 - +1.2 563,333 + Atu0578 0.30 +1.1 563,415 + Atu0578 0.48 +0.9 563,537 + Atu0578 0.75 +1.2 563,558 + Atu0578 0.80 +0.8 563,558 + Atu0578 0.80 +1.6 563,674 + +0.6 563,674 + +0.8 563,674 + +0.7 563,677 - +1.6 563,704 + Atu0579 0.14 +1.1 563,728 + Atu0579 0.19 +1.1 563,728 - Atu0579 0.19 +0.6 563,774 + Atu0579 0.28 +0.8 563,778 + Atu0579 0.29 +0.2
Or see this region's nucleotide sequence