Strain Fitness in Agrobacterium fabrum C58 around Atu4281

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,404,948	-				+0.2
1,404,995	+				-0.0
1,405,094	-				+0.5
1,405,234	+		Atu4280	0.12	+0.3
1,405,290	+		Atu4280	0.19	-2.0
1,405,448	+		Atu4280	0.39	-0.3
1,405,448	+		Atu4280	0.39	+0.2
1,405,456	-		Atu4280	0.40	+0.1
1,405,489	+		Atu4280	0.44	-0.0
1,405,712	-		Atu4280	0.73	-0.0
1,405,848	+				-0.4
1,405,875	+				-1.1
1,405,875	+				-0.1
1,405,883	-				+0.1
1,405,883	-				+0.7
1,405,891	-				+0.3
1,405,896	-				-0.3
1,405,922	-				+1.0
1,405,927	+				-0.2
1,405,935	-				-0.2
1,405,944	+				+0.6
1,405,984	+				-0.1
1,405,989	+				-0.2
1,405,990	+				-0.8
1,405,999	+		Atu4281	0.11	+0.7
1,406,156	-		Atu4281	0.33	+0.0
1,406,182	-		Atu4281	0.37	+0.0
1,406,239	+		Atu4281	0.45	-0.2
1,406,249	+		Atu4281	0.46	-0.0
1,406,249	+		Atu4281	0.46	+0.1
1,406,249	+		Atu4281	0.46	+0.4
1,406,257	-		Atu4281	0.48	-0.4
1,406,302	+		Atu4281	0.54	+0.9
1,406,307	+		Atu4281	0.55	+0.2
1,406,310	-		Atu4281	0.55	+0.6
1,406,310	-		Atu4281	0.55	-0.1
1,406,450	+		Atu4281	0.75	+0.0
1,406,538	+		Atu4281	0.87	+0.2
1,406,546	-		Atu4281	0.88	+0.0
1,406,594	-				+0.3
1,406,606	+				+0.2
1,406,606	+				-0.8
1,406,606	+				+0.1
1,406,607	+				+1.1
1,406,614	-				+0.0
1,406,640	+				-0.6
1,406,661	-				+0.2
1,406,827	+		Atu4282	0.27	-0.2
1,406,835	-		Atu4282	0.28	-0.1
1,406,835	-		Atu4282	0.28	-0.3
1,406,835	-		Atu4282	0.28	+0.7
1,406,867	-		Atu4282	0.32	+0.7
1,406,890	+		Atu4282	0.35	+0.6
1,406,909	-		Atu4282	0.38	+1.8
1,406,948	+		Atu4282	0.43	+1.5
1,406,982	-		Atu4282	0.47	+0.1
1,407,008	-		Atu4282	0.51	+0.5
1,407,087	+		Atu4282	0.61	-0.7
1,407,137	+		Atu4282	0.68	+0.9
1,407,164	+		Atu4282	0.71	+0.0
1,407,172	-		Atu4282	0.72	-0.4
1,407,172	-		Atu4282	0.72	+1.6
1,407,172	-		Atu4282	0.72	-0.1
1,407,239	-		Atu4282	0.81	-0.3
1,407,246	+		Atu4282	0.82	+1.2
1,407,254	-		Atu4282	0.83	-0.1
1,407,344	+				-0.5
1,407,457	-		Atu4283	0.10	+0.5
1,407,495	+		Atu4283	0.15	-0.1