Strain Fitness in Agrobacterium fabrum C58 around Atu2580

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
2,553,612	-		Atu2579	0.19	+1.7
2,553,641	+		Atu2579	0.22	+2.9
2,553,641	+		Atu2579	0.22	+1.3
2,553,673	-		Atu2579	0.26	+2.1
2,553,721	+		Atu2579	0.32	+1.1
2,553,754	-		Atu2579	0.36	+1.1
2,553,754	-		Atu2579	0.36	+1.3
2,553,815	-		Atu2579	0.43	+1.2
2,553,852	-		Atu2579	0.47	+2.0
2,553,852	-		Atu2579	0.47	+1.2
2,554,034	-		Atu2579	0.68	+1.2
2,554,056	+		Atu2579	0.71	+1.4
2,554,112	-		Atu2579	0.77	+2.0
2,554,198	-		Atu2579	0.87	+1.4
2,554,225	+				+1.5
2,554,302	+				+0.0
2,554,335	+				+0.5
2,554,335	+				+0.1
2,554,363	+				-0.6
2,554,431	+				+0.3
2,554,458	-				+0.0
2,554,480	-				+0.4
2,554,516	+				+0.7
2,554,662	+				+0.2
2,554,785	-		Atu2580	0.12	+1.0
2,554,787	+		Atu2580	0.12	-0.0
2,554,792	+		Atu2580	0.13	+0.2
2,554,795	-		Atu2580	0.13	+0.5
2,554,802	+		Atu2580	0.13	-0.1
2,554,820	-		Atu2580	0.14	-0.3
2,554,820	-		Atu2580	0.14	-0.0
2,554,825	-		Atu2580	0.15	+0.1
2,554,897	+		Atu2580	0.19	-0.7
2,554,910	+		Atu2580	0.20	+2.0
2,554,988	-		Atu2580	0.24	+0.0
2,555,091	+		Atu2580	0.30	+0.7
2,555,099	-		Atu2580	0.31	+0.3
2,555,156	+		Atu2580	0.34	+0.1
2,555,197	-		Atu2580	0.37	+0.6
2,555,210	-		Atu2580	0.37	-0.0
2,555,215	-		Atu2580	0.38	+0.0
2,555,275	-		Atu2580	0.41	+0.4
2,555,369	+		Atu2580	0.47	-0.8
2,555,369	+		Atu2580	0.47	-0.3
2,555,377	-		Atu2580	0.47	+0.4
2,555,505	-		Atu2580	0.55	-0.0
2,555,505	-		Atu2580	0.55	+0.4
2,555,596	-		Atu2580	0.60	-0.0
2,555,607	-		Atu2580	0.61	-0.1
2,555,618	+		Atu2580	0.61	+0.7
2,555,742	+		Atu2580	0.69	-1.4
2,555,757	+		Atu2580	0.70	+0.9
2,555,776	+		Atu2580	0.71	+0.5
2,555,820	+		Atu2580	0.73	+0.7
2,555,820	+		Atu2580	0.73	-0.0
2,555,867	+		Atu2580	0.76	-0.2
2,555,898	-		Atu2580	0.78	+0.4
2,556,153	+				+0.2
2,556,161	-				+0.6
2,556,163	+				-0.1
2,556,168	+				-0.0
2,556,171	-				+2.7
2,556,171	-				+0.3
2,556,171	-				-0.5
2,556,227	+				+1.4
2,556,245	-				+2.1
2,556,455	+		Atu8180	0.30	-0.6
2,556,548	-		Atu8180	0.50	+1.5
2,556,600	+		Atu8180	0.60	-0.0
2,556,608	-		Atu8180	0.62	-0.2
2,556,608	-		Atu8180	0.62	-2.0
2,556,711	-		Atu8180	0.83	-0.8
2,556,720	-		Atu8180	0.85	-0.4
2,556,734	+		Atu8180	0.88	-0.9
2,556,734	+		Atu8180	0.88	-0.3
2,556,741	+		Atu8180	0.90	+1.3
2,556,741	-		Atu8180	0.90	-0.0
2,556,749	-				+0.3
2,556,784	-				+1.1
2,556,898	-				+0.8
2,556,959	-		Atu2582	0.13	-1.1
2,557,030	-		Atu2582	0.18	-2.3
2,557,154	-		Atu2582	0.28	+0.7