Strain Fitness in Agrobacterium fabrum C58 around Atu2490

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
2,458,107	+		Atu2489	0.19	+0.8
2,458,197	-		Atu2489	0.30	+0.1
2,458,218	-		Atu2489	0.33	+0.6
2,458,225	-		Atu2489	0.34	+0.4
2,458,294	-		Atu2489	0.42	+1.5
2,458,456	-		Atu2489	0.62	+1.5
2,458,466	+		Atu2489	0.63	+1.2
2,458,494	-		Atu2489	0.67	+1.5
2,458,494	-		Atu2489	0.67	+0.8
2,458,494	-		Atu2489	0.67	+1.4
2,458,535	-		Atu2489	0.72	+1.3
2,458,581	+		Atu2489	0.77	+1.1
2,458,605	+		Atu2489	0.80	+1.2
2,458,718	+				+1.5
2,458,746	-				+1.3
2,458,814	+				+0.3
2,458,822	-				+1.2
2,458,929	+				+1.5
2,458,937	-				+1.0
2,458,937	-				+1.3
2,458,955	-				+0.3
2,459,006	-				-0.1
2,460,173	-		Atu2491	0.41	+0.1
2,460,207	-		Atu2491	0.50	-0.7
2,460,331	-		Atu2491	0.82	+0.1
2,460,462	+				+0.4
2,460,470	-				+0.5
2,460,507	+				+0.3
2,460,522	-				+0.0
2,460,608	-				-1.7
2,460,610	+				+0.9
2,460,654	+				+0.6
2,460,792	+		Atu2492	0.12	-0.3
2,460,793	+		Atu2492	0.13	-0.1
2,460,793	+		Atu2492	0.13	+0.0
2,460,827	-		Atu2492	0.14	+0.9
2,460,850	+		Atu2492	0.16	-1.1
2,460,858	-		Atu2492	0.16	+0.5
2,460,860	+		Atu2492	0.16	-1.2
2,460,868	-		Atu2492	0.17	+0.1
2,460,895	-		Atu2492	0.18	-0.1
2,460,928	-		Atu2492	0.20	-0.8
2,460,945	-		Atu2492	0.21	-0.9