Strain Fitness in Agrobacterium fabrum C58 around Atu2086

Experiment: R2A with Ceftazidime 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2085 and Atu2086 are separated by 270 nucleotidesAtu2086 and Atu2087 are separated by 92 nucleotides Atu2085: Atu2085 - UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase, at 2,045,892 to 2,046,848 Atu2085 Atu2086: Atu2086 - cell division protein, at 2,047,119 to 2,048,870 Atu2086 Atu2087: Atu2087 - cell division protein, at 2,048,963 to 2,050,294 Atu2087 Position (kb) 2047 2048 2049Strain fitness (log2 ratio) -1 0 1at 2047.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM
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2,047,116 + -0.7

Or see this region's nucleotide sequence