Strain Fitness in Agrobacterium fabrum C58 around Atu1371

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,364,675	+		Atu1370	0.19	+0.2
1,364,777	-		Atu1370	0.27	+0.5
1,365,008	-		Atu1370	0.47	+0.2
1,365,048	+		Atu1370	0.50	+0.4
1,365,119	-		Atu1370	0.56	-0.1
1,365,161	-		Atu1370	0.59	-0.6
1,365,234	-		Atu1370	0.65	+0.3
1,365,284	-		Atu1370	0.70	-1.0
1,365,294	+		Atu1370	0.70	-0.0
1,365,345	+		Atu1370	0.75	-0.2
1,365,364	+		Atu1370	0.76	+0.6
1,365,398	-		Atu1370	0.79	-1.4
1,365,408	-		Atu1370	0.80	+0.1
1,365,409	+		Atu1370	0.80	+0.2
1,365,409	+		Atu1370	0.80	+0.5
1,365,417	-		Atu1370	0.81	-0.6
1,365,682	-				-0.0
1,365,706	+				+0.3
1,365,801	-		Atu1371	0.22	-0.3
1,365,815	-		Atu1371	0.24	-1.9
1,365,820	-		Atu1371	0.24	-1.1
1,365,930	-		Atu1371	0.40	+0.4
1,366,001	-		Atu1371	0.49	-2.0
1,366,084	+		Atu1371	0.61	+0.9
1,366,092	-		Atu1371	0.62	+0.7
1,366,094	+		Atu1371	0.62	+0.5
1,366,124	+		Atu1371	0.67	+0.3
1,366,129	+		Atu1371	0.67	+0.1
1,366,130	-		Atu1371	0.67	-0.1
1,366,137	-		Atu1371	0.68	+0.6
1,366,247	-		Atu1371	0.84	-1.4
1,366,350	+				+0.2
1,366,430	+		Atu1372	0.10	-0.7
1,366,460	+		Atu1372	0.17	-0.6
1,366,486	-		Atu1372	0.22	+0.7
1,366,486	-		Atu1372	0.22	+0.4
1,366,536	-		Atu1372	0.33	+0.9
1,366,611	+		Atu1372	0.49	+0.2
1,366,611	+		Atu1372	0.49	-0.5
1,366,619	-		Atu1372	0.50	+0.3
1,366,619	-		Atu1372	0.50	+0.7
1,366,619	-		Atu1372	0.50	-0.4
1,366,658	-		Atu1372	0.59	+0.2
1,366,832	+				+0.0
1,366,918	-				-0.5
1,367,007	+				-1.6
1,367,007	+				-3.4
1,367,022	+				-0.6
1,367,030	-				+0.8
1,367,120	+		Atu1373	0.18	-1.0
1,367,208	+		Atu1373	0.28	-0.8
1,367,247	+		Atu1373	0.33	-1.7
1,367,247	+		Atu1373	0.33	-1.4
1,367,247	+		Atu1373	0.33	-0.3
1,367,247	+		Atu1373	0.33	+0.9
1,367,278	+		Atu1373	0.37	-1.4
1,367,291	+		Atu1373	0.38	-0.7
1,367,298	+		Atu1373	0.39	-1.6
1,367,298	+		Atu1373	0.39	-0.7
1,367,298	+		Atu1373	0.39	-3.4
1,367,306	-		Atu1373	0.40	-2.0
1,367,306	-		Atu1373	0.40	-2.3
1,367,327	-		Atu1373	0.42	+0.2
1,367,327	-		Atu1373	0.42	-1.1
1,367,327	-		Atu1373	0.42	-1.0
1,367,346	-		Atu1373	0.45	-0.5