Strain Fitness in Agrobacterium fabrum C58 around Atu1179

Experiment: R2A with Ceftazidime 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1178 and Atu1179 are separated by 4 nucleotidesAtu1179 and Atu1180 are separated by 241 nucleotidesAtu1180 and Atu1181 are separated by 274 nucleotides Atu1178: Atu1178 - fatty acid/phospholipid synthesis protein, at 1,171,495 to 1,172,556 Atu1178 Atu1179: Atu1179 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 1,172,561 to 1,173,532 Atu1179 Atu1180: Atu1180 - integration host factor alpha subunit, at 1,173,774 to 1,174,112 Atu1180 Atu1181: Atu1181 - hypothetical protein, at 1,174,387 to 1,174,920 Atu1181 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -1 0 1at 1173.587 kb on + strandat 1173.646 kb on + strandat 1173.646 kb on + strandat 1173.647 kb on + strandat 1173.654 kb on + strandat 1174.367 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM
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1,173,587 + -0.2
1,173,646 + +0.1
1,173,646 + -0.1
1,173,647 + +0.1
1,173,654 + -0.9
1,174,367 + -0.7

Or see this region's nucleotide sequence