Strain Fitness in Agrobacterium fabrum C58 around Atu0002

Experiment: R2A with Ceftazidime 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0001 and Atu0002 are separated by 31 nucleotidesAtu0002 and Atu0003 overlap by 8 nucleotidesAtu0003 and Atu0004 overlap by 1 nucleotides Atu0001: Atu0001 - hypothetical protein, at 203 to 1,024 Atu0001 Atu0002: Atu0002 - putative inhibitor of septum formation, at 1,056 to 1,655 Atu0002 Atu0003: Atu0003 - shikimate 5-dehydrogenase, at 1,648 to 2,508 Atu0003 Atu0004: Atu0004 - dephospho-CoA kinase, at 2,508 to 3,089 Atu0004 Position (kb) 1 2Strain fitness (log2 ratio) -1 0 1at 0.260 kb on + strandat 0.342 kb on + strand, within Atu0001at 0.447 kb on + strand, within Atu0001at 0.518 kb on + strand, within Atu0001at 0.532 kb on + strand, within Atu0001at 0.540 kb on - strand, within Atu0001at 0.746 kb on - strand, within Atu0001at 0.843 kb on - strand, within Atu0001at 0.855 kb on - strand, within Atu0001at 0.874 kb on + strand, within Atu0001at 1.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM
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260 + -1.1
342 + Atu0001 0.17 +0.1
447 + Atu0001 0.30 -0.3
518 + Atu0001 0.38 +0.5
532 + Atu0001 0.40 -0.1
540 - Atu0001 0.41 -1.3
746 - Atu0001 0.66 -0.3
843 - Atu0001 0.78 -0.2
855 - Atu0001 0.79 -0.4
874 + Atu0001 0.82 +0.6
1,014 - +0.3

Or see this region's nucleotide sequence