Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17035

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17025 and RPSI07_RS17030 are separated by 19 nucleotidesRPSI07_RS17030 and RPSI07_RS17035 are separated by 4 nucleotidesRPSI07_RS17035 and RPSI07_RS17040 overlap by 4 nucleotidesRPSI07_RS17040 and RPSI07_RS17045 overlap by 4 nucleotides RPSI07_RS17025: RPSI07_RS17025 - RNA methyltransferase, at 2,020,994 to 2,021,773 _RS17025 RPSI07_RS17030: RPSI07_RS17030 - ribonuclease HII, at 2,021,793 to 2,022,503 _RS17030 RPSI07_RS17035: RPSI07_RS17035 - lipid-A-disaccharide synthase, at 2,022,508 to 2,023,680 _RS17035 RPSI07_RS17040: RPSI07_RS17040 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 2,023,677 to 2,024,492 _RS17040 RPSI07_RS17045: RPSI07_RS17045 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, at 2,024,489 to 2,024,983 _RS17045 Position (kb) 2022 2023 2024Strain fitness (log2 ratio) -2 -1 0 1at 2021.649 kb on + strand, within RPSI07_RS17025at 2022.281 kb on - strand, within RPSI07_RS17030

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
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2,021,649 + RPSI07_RS17025 0.84 -1.1
2,022,281 - RPSI07_RS17030 0.69 -1.9

Or see this region's nucleotide sequence