Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10560 and RPSI07_RS10565 are separated by 575 nucleotides RPSI07_RS10565 and RPSI07_RS10570 are separated by 9 nucleotides
RPSI07_RS10560: RPSI07_RS10560 - RNA polymerase sigma factor, at 572,716 to 573,273
_RS10560
RPSI07_RS10565: RPSI07_RS10565 - ubiquinol oxidase subunit II, at 573,849 to 574,835
_RS10565
RPSI07_RS10570: RPSI07_RS10570 - cytochrome o ubiquinol oxidase subunit I, at 574,845 to 576,824
_RS10570
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 573.056 kb on + strand, within RPSI07_RS10560 at 573.056 kb on + strand, within RPSI07_RS10560 at 573.057 kb on - strand, within RPSI07_RS10560 at 573.057 kb on - strand, within RPSI07_RS10560 at 573.188 kb on + strand, within RPSI07_RS10560 at 573.188 kb on + strand, within RPSI07_RS10560 at 573.188 kb on + strand, within RPSI07_RS10560 at 573.189 kb on - strand, within RPSI07_RS10560 at 573.559 kb on + strand at 573.559 kb on + strand at 573.559 kb on + strand at 574.167 kb on + strand, within RPSI07_RS10565 at 574.590 kb on + strand, within RPSI07_RS10565 at 574.635 kb on + strand, within RPSI07_RS10565 at 574.635 kb on + strand, within RPSI07_RS10565 at 574.635 kb on + strand, within RPSI07_RS10565 at 574.636 kb on - strand, within RPSI07_RS10565 at 574.681 kb on - strand, within RPSI07_RS10565 at 574.971 kb on + strand at 575.025 kb on + strand at 575.121 kb on + strand, within RPSI07_RS10570 at 575.409 kb on + strand, within RPSI07_RS10570 at 575.412 kb on + strand, within RPSI07_RS10570 at 575.616 kb on + strand, within RPSI07_RS10570 at 575.667 kb on + strand, within RPSI07_RS10570 at 575.668 kb on - strand, within RPSI07_RS10570 at 575.668 kb on - strand, within RPSI07_RS10570 at 575.668 kb on - strand, within RPSI07_RS10570 at 575.707 kb on - strand, within RPSI07_RS10570 at 575.707 kb on - strand, within RPSI07_RS10570
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days remove 573,056 + RPSI07_RS10560 0.61 -0.3 573,056 + RPSI07_RS10560 0.61 -0.6 573,057 - RPSI07_RS10560 0.61 +1.8 573,057 - RPSI07_RS10560 0.61 -0.4 573,188 + RPSI07_RS10560 0.85 -0.4 573,188 + RPSI07_RS10560 0.85 -0.3 573,188 + RPSI07_RS10560 0.85 -0.9 573,189 - RPSI07_RS10560 0.85 +0.7 573,559 + +0.1 573,559 + +0.9 573,559 + +0.4 574,167 + RPSI07_RS10565 0.32 -2.0 574,590 + RPSI07_RS10565 0.75 +0.2 574,635 + RPSI07_RS10565 0.80 +0.8 574,635 + RPSI07_RS10565 0.80 -1.2 574,635 + RPSI07_RS10565 0.80 -0.2 574,636 - RPSI07_RS10565 0.80 +0.8 574,681 - RPSI07_RS10565 0.84 -1.1 574,971 + -0.5 575,025 + -0.2 575,121 + RPSI07_RS10570 0.14 -2.0 575,409 + RPSI07_RS10570 0.28 -0.6 575,412 + RPSI07_RS10570 0.29 -2.2 575,616 + RPSI07_RS10570 0.39 -0.8 575,667 + RPSI07_RS10570 0.42 +0.2 575,668 - RPSI07_RS10570 0.42 +1.4 575,668 - RPSI07_RS10570 0.42 -0.8 575,668 - RPSI07_RS10570 0.42 -0.8 575,707 - RPSI07_RS10570 0.44 -2.6 575,707 - RPSI07_RS10570 0.44 +3.1
Or see this region's nucleotide sequence