Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS01160 and RPSI07_RS01165 are separated by 289 nucleotides RPSI07_RS01165 and RPSI07_RS01170 are separated by 150 nucleotides
RPSI07_RS01160: RPSI07_RS01160 - tetratricopeptide repeat protein, at 319,599 to 321,626
_RS01160
RPSI07_RS01165: RPSI07_RS01165 - hypothetical protein, at 321,916 to 322,320
_RS01165
RPSI07_RS01170: RPSI07_RS01170 - hypothetical protein, at 322,471 to 323,649
_RS01170
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 321.232 kb on + strand, within RPSI07_RS01160 at 321.233 kb on - strand, within RPSI07_RS01160 at 321.233 kb on - strand, within RPSI07_RS01160 at 321.250 kb on + strand, within RPSI07_RS01160 at 321.250 kb on + strand, within RPSI07_RS01160 at 321.250 kb on + strand, within RPSI07_RS01160 at 321.251 kb on - strand, within RPSI07_RS01160 at 321.251 kb on - strand, within RPSI07_RS01160 at 321.296 kb on - strand, within RPSI07_RS01160 at 321.296 kb on - strand, within RPSI07_RS01160 at 321.353 kb on + strand, within RPSI07_RS01160 at 321.353 kb on + strand, within RPSI07_RS01160 at 321.353 kb on + strand, within RPSI07_RS01160 at 321.354 kb on - strand, within RPSI07_RS01160 at 321.354 kb on - strand, within RPSI07_RS01160 at 321.354 kb on - strand, within RPSI07_RS01160 at 321.354 kb on - strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.355 kb on + strand, within RPSI07_RS01160 at 321.356 kb on - strand, within RPSI07_RS01160 at 321.356 kb on - strand, within RPSI07_RS01160 at 321.356 kb on - strand, within RPSI07_RS01160 at 321.356 kb on - strand, within RPSI07_RS01160 at 321.356 kb on - strand, within RPSI07_RS01160 at 321.356 kb on - strand, within RPSI07_RS01160 at 321.356 kb on - strand, within RPSI07_RS01160 at 321.357 kb on - strand, within RPSI07_RS01160 at 321.400 kb on + strand, within RPSI07_RS01160 at 321.400 kb on + strand, within RPSI07_RS01160 at 321.453 kb on - strand at 321.719 kb on + strand at 321.720 kb on - strand at 321.720 kb on - strand at 321.803 kb on + strand at 321.804 kb on - strand at 321.804 kb on - strand at 321.804 kb on - strand at 321.831 kb on + strand at 321.832 kb on - strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.154 kb on + strand, within RPSI07_RS01165 at 322.154 kb on + strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.234 kb on + strand, within RPSI07_RS01165 at 322.234 kb on + strand, within RPSI07_RS01165 at 322.242 kb on + strand, within RPSI07_RS01165 at 322.318 kb on + strand at 322.331 kb on + strand at 322.331 kb on + strand at 322.331 kb on + strand at 322.416 kb on + strand at 322.416 kb on + strand at 322.423 kb on + strand at 322.423 kb on + strand at 322.423 kb on + strand at 322.423 kb on + strand at 322.424 kb on - strand at 322.424 kb on - strand at 322.424 kb on - strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.468 kb on - strand at 322.468 kb on - strand at 322.468 kb on - strand at 322.468 kb on - strand at 322.627 kb on - strand, within RPSI07_RS01170 at 322.627 kb on - strand, within RPSI07_RS01170 at 322.696 kb on + strand, within RPSI07_RS01170 at 322.696 kb on + strand, within RPSI07_RS01170 at 322.697 kb on - strand, within RPSI07_RS01170 at 322.697 kb on - strand, within RPSI07_RS01170 at 322.714 kb on + strand, within RPSI07_RS01170 at 322.714 kb on + strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.897 kb on + strand, within RPSI07_RS01170 at 322.952 kb on + strand, within RPSI07_RS01170 at 322.953 kb on - strand, within RPSI07_RS01170 at 322.996 kb on + strand, within RPSI07_RS01170 at 322.996 kb on + strand, within RPSI07_RS01170 at 322.996 kb on + strand, within RPSI07_RS01170 at 322.996 kb on + strand, within RPSI07_RS01170 at 322.997 kb on - strand, within RPSI07_RS01170 at 322.997 kb on - strand, within RPSI07_RS01170 at 322.997 kb on - strand, within RPSI07_RS01170 at 322.997 kb on - strand, within RPSI07_RS01170 at 323.011 kb on + strand, within RPSI07_RS01170 at 323.011 kb on + strand, within RPSI07_RS01170 at 323.012 kb on - strand, within RPSI07_RS01170 at 323.012 kb on - strand, within RPSI07_RS01170 at 323.068 kb on + strand, within RPSI07_RS01170 at 323.068 kb on + strand, within RPSI07_RS01170 at 323.068 kb on + strand, within RPSI07_RS01170 at 323.069 kb on - strand, within RPSI07_RS01170 at 323.069 kb on - strand, within RPSI07_RS01170 at 323.069 kb on - strand, within RPSI07_RS01170 at 323.069 kb on - strand, within RPSI07_RS01170 at 323.257 kb on + strand, within RPSI07_RS01170 at 323.257 kb on + strand, within RPSI07_RS01170 at 323.257 kb on + strand, within RPSI07_RS01170 at 323.258 kb on - strand, within RPSI07_RS01170 at 323.320 kb on + strand, within RPSI07_RS01170 at 323.320 kb on + strand, within RPSI07_RS01170 at 323.320 kb on + strand, within RPSI07_RS01170 at 323.320 kb on + strand, within RPSI07_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days remove 321,232 + RPSI07_RS01160 0.81 -1.3 321,233 - RPSI07_RS01160 0.81 -1.0 321,233 - RPSI07_RS01160 0.81 +0.2 321,250 + RPSI07_RS01160 0.81 +0.1 321,250 + RPSI07_RS01160 0.81 +2.8 321,250 + RPSI07_RS01160 0.81 +0.4 321,251 - RPSI07_RS01160 0.81 -1.8 321,251 - RPSI07_RS01160 0.81 +0.8 321,296 - RPSI07_RS01160 0.84 -1.2 321,296 - RPSI07_RS01160 0.84 -2.4 321,353 + RPSI07_RS01160 0.86 -3.3 321,353 + RPSI07_RS01160 0.86 +0.1 321,353 + RPSI07_RS01160 0.86 +0.5 321,354 - RPSI07_RS01160 0.87 -0.9 321,354 - RPSI07_RS01160 0.87 -0.0 321,354 - RPSI07_RS01160 0.87 -0.1 321,354 - RPSI07_RS01160 0.87 +2.4 321,355 + RPSI07_RS01160 0.87 +0.4 321,355 + RPSI07_RS01160 0.87 -1.2 321,355 + RPSI07_RS01160 0.87 -1.0 321,355 + RPSI07_RS01160 0.87 -0.5 321,355 + RPSI07_RS01160 0.87 -1.5 321,355 + RPSI07_RS01160 0.87 +0.8 321,355 + RPSI07_RS01160 0.87 -0.0 321,355 + RPSI07_RS01160 0.87 +0.3 321,355 + RPSI07_RS01160 0.87 +0.6 321,355 + RPSI07_RS01160 0.87 -0.2 321,355 + RPSI07_RS01160 0.87 +1.0 321,355 + RPSI07_RS01160 0.87 +0.3 321,355 + RPSI07_RS01160 0.87 -0.0 321,355 + RPSI07_RS01160 0.87 -0.3 321,356 - RPSI07_RS01160 0.87 -0.5 321,356 - RPSI07_RS01160 0.87 -0.5 321,356 - RPSI07_RS01160 0.87 +0.8 321,356 - RPSI07_RS01160 0.87 -0.0 321,356 - RPSI07_RS01160 0.87 +1.8 321,356 - RPSI07_RS01160 0.87 +1.8 321,356 - RPSI07_RS01160 0.87 -1.2 321,357 - RPSI07_RS01160 0.87 -0.2 321,400 + RPSI07_RS01160 0.89 +0.5 321,400 + RPSI07_RS01160 0.89 -0.8 321,453 - -1.1 321,719 + +0.5 321,720 - +0.2 321,720 - -0.5 321,803 + -1.4 321,804 - -0.5 321,804 - +0.4 321,804 - +0.8 321,831 + -0.9 321,832 - +0.8 321,841 + +0.1 321,841 + -0.2 321,841 + +1.1 321,841 + -2.3 321,841 + -0.2 321,841 + -0.9 321,841 + -0.6 321,841 + +2.2 321,842 - -0.7 321,842 - +2.4 321,842 - +0.4 321,842 - +0.3 321,842 - +1.8 321,842 - -0.7 321,842 - +0.2 321,842 - -2.6 321,842 - -0.6 321,842 - -0.8 322,138 + RPSI07_RS01165 0.55 -0.1 322,138 + RPSI07_RS01165 0.55 -0.2 322,138 + RPSI07_RS01165 0.55 -1.3 322,138 + RPSI07_RS01165 0.55 -1.0 322,138 + RPSI07_RS01165 0.55 +0.2 322,138 + RPSI07_RS01165 0.55 -1.4 322,139 - RPSI07_RS01165 0.55 +3.1 322,139 - RPSI07_RS01165 0.55 -0.5 322,139 - RPSI07_RS01165 0.55 -1.0 322,139 - RPSI07_RS01165 0.55 +2.0 322,139 - RPSI07_RS01165 0.55 +0.6 322,139 - RPSI07_RS01165 0.55 -0.7 322,139 - RPSI07_RS01165 0.55 -1.6 322,154 + RPSI07_RS01165 0.59 -1.0 322,154 + RPSI07_RS01165 0.59 -0.5 322,155 - RPSI07_RS01165 0.59 -0.0 322,155 - RPSI07_RS01165 0.59 -1.5 322,155 - RPSI07_RS01165 0.59 +0.8 322,155 - RPSI07_RS01165 0.59 -1.1 322,155 - RPSI07_RS01165 0.59 -0.2 322,155 - RPSI07_RS01165 0.59 +0.6 322,155 - RPSI07_RS01165 0.59 -0.2 322,234 + RPSI07_RS01165 0.79 -3.1 322,234 + RPSI07_RS01165 0.79 -0.6 322,242 + RPSI07_RS01165 0.80 -0.4 322,318 + +0.2 322,331 + +0.6 322,331 + +0.8 322,331 + +1.4 322,416 + +1.4 322,416 + +1.5 322,423 + -1.0 322,423 + +0.8 322,423 + +1.0 322,423 + +2.1 322,424 - +0.2 322,424 - -0.4 322,424 - +0.3 322,467 + -2.3 322,467 + +0.2 322,467 + +2.4 322,467 + +0.5 322,467 + +0.1 322,467 + +0.2 322,468 - +0.1 322,468 - +0.8 322,468 - -1.0 322,468 - +0.8 322,627 - RPSI07_RS01170 0.13 -0.2 322,627 - RPSI07_RS01170 0.13 +0.2 322,696 + RPSI07_RS01170 0.19 -1.1 322,696 + RPSI07_RS01170 0.19 +2.8 322,697 - RPSI07_RS01170 0.19 +2.8 322,697 - RPSI07_RS01170 0.19 +1.3 322,714 + RPSI07_RS01170 0.21 -2.5 322,714 + RPSI07_RS01170 0.21 +1.4 322,715 - RPSI07_RS01170 0.21 +1.8 322,715 - RPSI07_RS01170 0.21 +0.6 322,715 - RPSI07_RS01170 0.21 -0.1 322,715 - RPSI07_RS01170 0.21 +0.1 322,715 - RPSI07_RS01170 0.21 -1.0 322,715 - RPSI07_RS01170 0.21 -0.6 322,897 + RPSI07_RS01170 0.36 -0.2 322,952 + RPSI07_RS01170 0.41 +0.1 322,953 - RPSI07_RS01170 0.41 -0.3 322,996 + RPSI07_RS01170 0.45 -0.6 322,996 + RPSI07_RS01170 0.45 +0.0 322,996 + RPSI07_RS01170 0.45 -0.4 322,996 + RPSI07_RS01170 0.45 -1.2 322,997 - RPSI07_RS01170 0.45 +0.8 322,997 - RPSI07_RS01170 0.45 -1.0 322,997 - RPSI07_RS01170 0.45 +0.8 322,997 - RPSI07_RS01170 0.45 -1.7 323,011 + RPSI07_RS01170 0.46 -0.6 323,011 + RPSI07_RS01170 0.46 -0.0 323,012 - RPSI07_RS01170 0.46 -0.3 323,012 - RPSI07_RS01170 0.46 -0.2 323,068 + RPSI07_RS01170 0.51 -1.5 323,068 + RPSI07_RS01170 0.51 -0.4 323,068 + RPSI07_RS01170 0.51 -1.7 323,069 - RPSI07_RS01170 0.51 +0.8 323,069 - RPSI07_RS01170 0.51 +0.5 323,069 - RPSI07_RS01170 0.51 +0.8 323,069 - RPSI07_RS01170 0.51 -0.8 323,257 + RPSI07_RS01170 0.67 +0.4 323,257 + RPSI07_RS01170 0.67 -0.7 323,257 + RPSI07_RS01170 0.67 -0.5 323,258 - RPSI07_RS01170 0.67 -1.6 323,320 + RPSI07_RS01170 0.72 -1.1 323,320 + RPSI07_RS01170 0.72 -0.8 323,320 + RPSI07_RS01170 0.72 -0.4 323,320 + RPSI07_RS01170 0.72 +0.6
Or see this region's nucleotide sequence