Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS00735 and RPSI07_RS00740 are separated by 6 nucleotides RPSI07_RS00740 and RPSI07_RS00745 are separated by 21 nucleotides RPSI07_RS00745 and RPSI07_RS00750 are separated by 425 nucleotides
RPSI07_RS00735: RPSI07_RS00735 - DUF3304 domain-containing protein, at 196,389 to 196,964
_RS00735
RPSI07_RS00740: RPSI07_RS00740 - DUF4123 domain-containing protein, at 196,971 to 197,870
_RS00740
RPSI07_RS00745: RPSI07_RS00745 - DUF2345 domain-containing protein, at 197,892 to 200,771
_RS00745
RPSI07_RS00750: RPSI07_RS00750 - ATP-binding protein, at 201,197 to 202,582
_RS00750
Position (kb) 197
198
199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 197.008 kb on + strand at 197.008 kb on + strand at 197.008 kb on + strand at 197.008 kb on + strand at 197.008 kb on + strand at 197.008 kb on + strand at 197.008 kb on + strand at 197.009 kb on - strand at 197.009 kb on - strand at 197.009 kb on - strand at 197.182 kb on + strand, within RPSI07_RS00740 at 197.183 kb on - strand, within RPSI07_RS00740 at 197.318 kb on - strand, within RPSI07_RS00740 at 197.383 kb on + strand at 197.383 kb on + strand, within RPSI07_RS00740 at 197.384 kb on - strand, within RPSI07_RS00740 at 197.485 kb on + strand, within RPSI07_RS00740 at 197.665 kb on + strand, within RPSI07_RS00740 at 197.666 kb on - strand, within RPSI07_RS00740 at 197.710 kb on + strand, within RPSI07_RS00740 at 197.710 kb on + strand, within RPSI07_RS00740 at 197.711 kb on - strand, within RPSI07_RS00740 at 197.711 kb on - strand, within RPSI07_RS00740 at 197.711 kb on - strand, within RPSI07_RS00740 at 197.711 kb on - strand, within RPSI07_RS00740 at 197.755 kb on + strand, within RPSI07_RS00740 at 197.755 kb on + strand, within RPSI07_RS00740 at 197.756 kb on - strand, within RPSI07_RS00740 at 197.782 kb on + strand at 197.782 kb on + strand at 197.782 kb on + strand at 197.782 kb on + strand at 197.783 kb on - strand at 197.783 kb on - strand at 197.866 kb on + strand at 197.866 kb on + strand at 197.866 kb on + strand at 197.866 kb on + strand at 197.866 kb on + strand at 197.866 kb on + strand at 197.867 kb on - strand at 197.867 kb on - strand at 197.867 kb on - strand at 197.867 kb on - strand at 197.867 kb on - strand at 197.867 kb on - strand at 197.870 kb on + strand at 197.870 kb on + strand at 197.870 kb on + strand at 197.870 kb on + strand at 197.870 kb on + strand at 197.870 kb on + strand at 197.870 kb on + strand at 197.870 kb on + strand at 197.871 kb on - strand at 197.871 kb on - strand at 197.871 kb on - strand at 197.871 kb on - strand at 197.871 kb on - strand at 197.871 kb on - strand at 197.871 kb on - strand at 197.872 kb on - strand at 197.893 kb on + strand at 197.894 kb on - strand at 198.022 kb on + strand at 198.022 kb on + strand at 198.022 kb on + strand at 198.022 kb on + strand at 198.022 kb on + strand at 198.022 kb on + strand at 198.022 kb on + strand at 198.022 kb on + strand at 198.023 kb on - strand at 198.023 kb on - strand at 198.023 kb on - strand at 198.023 kb on - strand at 198.023 kb on - strand at 198.023 kb on - strand at 198.023 kb on - strand at 198.098 kb on + strand at 198.098 kb on + strand at 198.098 kb on + strand at 199.063 kb on + strand, within RPSI07_RS00745 at 199.063 kb on + strand, within RPSI07_RS00745 at 199.063 kb on + strand, within RPSI07_RS00745 at 199.149 kb on - strand, within RPSI07_RS00745 at 199.151 kb on - strand, within RPSI07_RS00745 at 199.151 kb on - strand, within RPSI07_RS00745 at 200.815 kb on - strand at 200.815 kb on - strand at 200.840 kb on - strand at 200.876 kb on + strand at 200.876 kb on + strand at 200.886 kb on + strand at 201.094 kb on + strand at 201.240 kb on + strand at 201.240 kb on + strand at 201.240 kb on + strand at 201.240 kb on + strand at 201.241 kb on - strand at 201.241 kb on - strand at 201.241 kb on - strand at 201.241 kb on - strand at 201.416 kb on + strand, within RPSI07_RS00750 at 201.416 kb on + strand, within RPSI07_RS00750 at 201.416 kb on + strand, within RPSI07_RS00750 at 201.416 kb on + strand, within RPSI07_RS00750 at 201.416 kb on + strand, within RPSI07_RS00750 at 201.417 kb on - strand, within RPSI07_RS00750 at 201.417 kb on - strand, within RPSI07_RS00750 at 201.417 kb on - strand, within RPSI07_RS00750 at 201.417 kb on - strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.420 kb on + strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.421 kb on - strand, within RPSI07_RS00750 at 201.483 kb on + strand, within RPSI07_RS00750 at 201.483 kb on + strand, within RPSI07_RS00750 at 201.483 kb on + strand, within RPSI07_RS00750 at 201.483 kb on + strand, within RPSI07_RS00750 at 201.484 kb on - strand, within RPSI07_RS00750 at 201.484 kb on - strand, within RPSI07_RS00750 at 201.484 kb on - strand, within RPSI07_RS00750 at 201.484 kb on - strand, within RPSI07_RS00750 at 201.484 kb on - strand, within RPSI07_RS00750 at 201.529 kb on + strand, within RPSI07_RS00750
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days remove 197,008 + +0.2 197,008 + -0.5 197,008 + -0.5 197,008 + +0.6 197,008 + +0.9 197,008 + +0.1 197,008 + -0.9 197,009 - -0.6 197,009 - +0.3 197,009 - -1.7 197,182 + RPSI07_RS00740 0.23 +1.6 197,183 - RPSI07_RS00740 0.24 +0.2 197,318 - RPSI07_RS00740 0.39 +0.3 197,383 + +0.8 197,383 + RPSI07_RS00740 0.46 +0.8 197,384 - RPSI07_RS00740 0.46 +0.4 197,485 + RPSI07_RS00740 0.57 +0.8 197,665 + RPSI07_RS00740 0.77 -0.6 197,666 - RPSI07_RS00740 0.77 -0.5 197,710 + RPSI07_RS00740 0.82 +0.6 197,710 + RPSI07_RS00740 0.82 +0.2 197,711 - RPSI07_RS00740 0.82 +0.2 197,711 - RPSI07_RS00740 0.82 -0.1 197,711 - RPSI07_RS00740 0.82 -1.0 197,711 - RPSI07_RS00740 0.82 -1.7 197,755 + RPSI07_RS00740 0.87 +0.8 197,755 + RPSI07_RS00740 0.87 -0.8 197,756 - RPSI07_RS00740 0.87 -0.0 197,782 + -2.6 197,782 + +0.3 197,782 + +1.5 197,782 + -0.8 197,783 - -1.3 197,783 - +0.0 197,866 + +0.3 197,866 + +0.8 197,866 + +0.2 197,866 + +0.0 197,866 + -0.4 197,866 + +2.4 197,867 - +0.8 197,867 - -0.3 197,867 - -0.4 197,867 - -1.8 197,867 - +0.3 197,867 - -1.4 197,870 + +1.4 197,870 + -0.0 197,870 + +0.2 197,870 + +0.8 197,870 + -0.1 197,870 + -0.3 197,870 + -0.4 197,870 + +0.8 197,871 - +1.4 197,871 - -0.8 197,871 - +0.1 197,871 - +1.1 197,871 - +0.5 197,871 - -0.2 197,871 - -0.2 197,872 - +1.1 197,893 + +1.5 197,894 - +0.2 198,022 + -0.4 198,022 + +1.8 198,022 + -0.8 198,022 + -0.6 198,022 + -1.6 198,022 + -0.6 198,022 + -1.7 198,022 + +1.8 198,023 - -0.1 198,023 - -2.1 198,023 - -0.2 198,023 - +2.8 198,023 - -0.2 198,023 - +0.8 198,023 - +0.8 198,098 + -0.2 198,098 + +2.4 198,098 + +0.8 199,063 + RPSI07_RS00745 0.41 -1.3 199,063 + RPSI07_RS00745 0.41 -0.6 199,063 + RPSI07_RS00745 0.41 -0.2 199,149 - RPSI07_RS00745 0.44 +0.2 199,151 - RPSI07_RS00745 0.44 +0.8 199,151 - RPSI07_RS00745 0.44 -1.1 200,815 - -0.6 200,815 - -0.0 200,840 - -1.3 200,876 + +1.4 200,876 + -0.0 200,886 + +0.7 201,094 + +0.3 201,240 + -0.3 201,240 + -0.8 201,240 + +1.0 201,240 + +1.3 201,241 - +1.1 201,241 - -0.6 201,241 - -0.5 201,241 - +0.6 201,416 + RPSI07_RS00750 0.16 +0.2 201,416 + RPSI07_RS00750 0.16 +1.1 201,416 + RPSI07_RS00750 0.16 +0.5 201,416 + RPSI07_RS00750 0.16 -0.2 201,416 + RPSI07_RS00750 0.16 -0.3 201,417 - RPSI07_RS00750 0.16 +1.8 201,417 - RPSI07_RS00750 0.16 -1.4 201,417 - RPSI07_RS00750 0.16 +0.8 201,417 - RPSI07_RS00750 0.16 +2.4 201,420 + RPSI07_RS00750 0.16 +2.8 201,420 + RPSI07_RS00750 0.16 +0.0 201,420 + RPSI07_RS00750 0.16 +0.6 201,420 + +0.8 201,420 + RPSI07_RS00750 0.16 -0.4 201,420 + RPSI07_RS00750 0.16 +0.4 201,420 + RPSI07_RS00750 0.16 +0.2 201,420 + RPSI07_RS00750 0.16 +0.8 201,420 + RPSI07_RS00750 0.16 -0.7 201,420 + RPSI07_RS00750 0.16 +2.1 201,420 + RPSI07_RS00750 0.16 -0.1 201,420 + RPSI07_RS00750 0.16 +1.8 201,420 + RPSI07_RS00750 0.16 -0.0 201,420 + RPSI07_RS00750 0.16 -0.1 201,421 - RPSI07_RS00750 0.16 +0.4 201,421 - RPSI07_RS00750 0.16 +0.1 201,421 - RPSI07_RS00750 0.16 -1.0 201,421 - RPSI07_RS00750 0.16 -0.8 201,421 - RPSI07_RS00750 0.16 -1.8 201,421 - RPSI07_RS00750 0.16 -0.4 201,421 - RPSI07_RS00750 0.16 -0.3 201,421 - RPSI07_RS00750 0.16 +0.8 201,421 - RPSI07_RS00750 0.16 +0.4 201,421 - RPSI07_RS00750 0.16 -0.2 201,421 - RPSI07_RS00750 0.16 -0.4 201,483 + RPSI07_RS00750 0.21 +1.5 201,483 + RPSI07_RS00750 0.21 -0.5 201,483 + RPSI07_RS00750 0.21 -0.2 201,483 + RPSI07_RS00750 0.21 +0.1 201,484 - RPSI07_RS00750 0.21 +1.8 201,484 - RPSI07_RS00750 0.21 +1.1 201,484 - RPSI07_RS00750 0.21 +0.1 201,484 - RPSI07_RS00750 0.21 -1.0 201,484 - RPSI07_RS00750 0.21 -1.7 201,529 + RPSI07_RS00750 0.24 +1.1
Or see this region's nucleotide sequence