Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10220 and RPSI07_RS10225 are separated by 102 nucleotides RPSI07_RS10225 and RPSI07_RS10230 are separated by 24 nucleotides RPSI07_RS10230 and RPSI07_RS10235 are separated by 8 nucleotides RPSI07_RS10235 and RPSI07_RS10240 are separated by 96 nucleotides
RPSI07_RS10220: RPSI07_RS10220 - c-type cytochrome biogenesis protein CcsB, at 501,446 to 502,633
_RS10220
RPSI07_RS10225: RPSI07_RS10225 - hypothetical protein, at 502,736 to 503,167
_RS10225
RPSI07_RS10230: RPSI07_RS10230 - RNA polymerase sigma factor, at 503,192 to 503,725
_RS10230
RPSI07_RS10235: RPSI07_RS10235 - membrane protein, at 503,734 to 504,594
_RS10235
RPSI07_RS10240: RPSI07_RS10240 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 504,691 to 505,686
_RS10240
Position (kb) 503
504 Strain fitness (log2 ratio) -2
-1
0
1
2 at 502.619 kb on + strand at 502.663 kb on - strand at 502.663 kb on - strand at 502.691 kb on + strand at 502.919 kb on + strand, within RPSI07_RS10225 at 502.920 kb on - strand, within RPSI07_RS10225 at 503.088 kb on - strand, within RPSI07_RS10225 at 503.088 kb on - strand, within RPSI07_RS10225 at 503.088 kb on - strand, within RPSI07_RS10225 at 503.773 kb on + strand at 503.773 kb on + strand at 503.774 kb on - strand at 503.774 kb on - strand at 503.821 kb on + strand, within RPSI07_RS10235 at 503.822 kb on - strand, within RPSI07_RS10235 at 504.136 kb on + strand, within RPSI07_RS10235 at 504.156 kb on + strand, within RPSI07_RS10235 at 504.157 kb on - strand, within RPSI07_RS10235 at 504.157 kb on - strand, within RPSI07_RS10235 at 504.157 kb on - strand, within RPSI07_RS10235 at 504.316 kb on + strand, within RPSI07_RS10235 at 504.316 kb on + strand, within RPSI07_RS10235 at 504.317 kb on - strand, within RPSI07_RS10235 at 504.469 kb on + strand, within RPSI07_RS10235 at 504.560 kb on - strand at 504.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days remove 502,619 + +0.4 502,663 - -2.2 502,663 - +0.9 502,691 + +0.0 502,919 + RPSI07_RS10225 0.42 +0.5 502,920 - RPSI07_RS10225 0.43 +0.3 503,088 - RPSI07_RS10225 0.81 +2.0 503,088 - RPSI07_RS10225 0.81 -0.8 503,088 - RPSI07_RS10225 0.81 +1.0 503,773 + -2.7 503,773 + -0.4 503,774 - +0.4 503,774 - -2.6 503,821 + RPSI07_RS10235 0.10 -2.7 503,822 - RPSI07_RS10235 0.10 +0.4 504,136 + RPSI07_RS10235 0.47 -0.5 504,156 + RPSI07_RS10235 0.49 -1.4 504,157 - RPSI07_RS10235 0.49 -0.4 504,157 - RPSI07_RS10235 0.49 -1.6 504,157 - RPSI07_RS10235 0.49 +0.4 504,316 + RPSI07_RS10235 0.68 -2.1 504,316 + RPSI07_RS10235 0.68 +2.7 504,317 - RPSI07_RS10235 0.68 -0.8 504,469 + RPSI07_RS10235 0.85 -1.0 504,560 - +1.2 504,560 - -0.5
Or see this region's nucleotide sequence