Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS09810 and RPSI07_RS09815 are separated by 168 nucleotides RPSI07_RS09815 and RPSI07_RS09820 are separated by 173 nucleotides RPSI07_RS09820 and RPSI07_RS09825 are separated by 120 nucleotides
RPSI07_RS09810: RPSI07_RS09810 - ethanolamine utilization protein EutH, at 419,844 to 421,010
_RS09810
RPSI07_RS09815: RPSI07_RS09815 - MFS transporter, at 421,179 to 422,477
_RS09815
RPSI07_RS09820: RPSI07_RS09820 - hypothetical protein, at 422,651 to 422,860
_RS09820
RPSI07_RS09825: RPSI07_RS09825 - MFS transporter, at 422,981 to 424,270
_RS09825
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 420.312 kb on + strand, within RPSI07_RS09810 at 420.312 kb on + strand, within RPSI07_RS09810 at 420.313 kb on - strand, within RPSI07_RS09810 at 420.382 kb on - strand, within RPSI07_RS09810 at 420.482 kb on + strand, within RPSI07_RS09810 at 420.681 kb on + strand, within RPSI07_RS09810 at 420.903 kb on + strand at 420.903 kb on + strand at 420.903 kb on + strand at 420.904 kb on - strand at 420.904 kb on - strand at 420.963 kb on + strand at 420.964 kb on - strand at 421.009 kb on - strand at 421.181 kb on - strand at 421.369 kb on + strand, within RPSI07_RS09815 at 421.369 kb on + strand, within RPSI07_RS09815 at 421.369 kb on + strand, within RPSI07_RS09815 at 421.444 kb on + strand, within RPSI07_RS09815 at 421.444 kb on + strand, within RPSI07_RS09815 at 421.444 kb on + strand, within RPSI07_RS09815 at 421.444 kb on + strand, within RPSI07_RS09815 at 421.444 kb on + strand, within RPSI07_RS09815 at 421.445 kb on - strand, within RPSI07_RS09815 at 421.445 kb on - strand, within RPSI07_RS09815 at 421.454 kb on - strand, within RPSI07_RS09815 at 421.723 kb on + strand, within RPSI07_RS09815 at 422.161 kb on + strand, within RPSI07_RS09815 at 422.162 kb on - strand, within RPSI07_RS09815 at 422.162 kb on - strand, within RPSI07_RS09815 at 422.377 kb on + strand at 422.377 kb on + strand at 422.377 kb on + strand at 422.378 kb on - strand at 422.378 kb on - strand at 422.378 kb on - strand at 422.386 kb on + strand at 422.387 kb on - strand at 422.401 kb on + strand at 422.401 kb on + strand at 422.401 kb on + strand at 422.401 kb on + strand at 422.402 kb on - strand at 422.471 kb on + strand at 422.503 kb on + strand at 422.503 kb on + strand at 422.503 kb on + strand at 422.503 kb on + strand at 422.504 kb on - strand at 422.504 kb on - strand at 422.504 kb on - strand at 422.547 kb on + strand at 422.548 kb on - strand at 422.762 kb on + strand, within RPSI07_RS09820 at 422.763 kb on + strand, within RPSI07_RS09820 at 423.162 kb on + strand, within RPSI07_RS09825 at 423.235 kb on + strand, within RPSI07_RS09825 at 423.236 kb on - strand, within RPSI07_RS09825 at 423.237 kb on + strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825 at 423.238 kb on - strand, within RPSI07_RS09825
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days remove 420,312 + RPSI07_RS09810 0.40 +2.7 420,312 + RPSI07_RS09810 0.40 -0.2 420,313 - RPSI07_RS09810 0.40 +2.4 420,382 - RPSI07_RS09810 0.46 +0.0 420,482 + RPSI07_RS09810 0.55 +0.5 420,681 + RPSI07_RS09810 0.72 -1.8 420,903 + -0.7 420,903 + -1.1 420,903 + -0.1 420,904 - +0.4 420,904 - -0.7 420,963 + -0.1 420,964 - +3.2 421,009 - -0.7 421,181 - +0.2 421,369 + RPSI07_RS09815 0.15 -1.0 421,369 + RPSI07_RS09815 0.15 +1.3 421,369 + RPSI07_RS09815 0.15 +2.2 421,444 + RPSI07_RS09815 0.20 +2.0 421,444 + RPSI07_RS09815 0.20 -0.7 421,444 + RPSI07_RS09815 0.20 +1.0 421,444 + RPSI07_RS09815 0.20 +0.4 421,444 + RPSI07_RS09815 0.20 +0.1 421,445 - RPSI07_RS09815 0.20 -1.1 421,445 - RPSI07_RS09815 0.20 +0.6 421,454 - RPSI07_RS09815 0.21 -1.2 421,723 + RPSI07_RS09815 0.42 +1.2 422,161 + RPSI07_RS09815 0.76 +3.2 422,162 - RPSI07_RS09815 0.76 -1.3 422,162 - RPSI07_RS09815 0.76 +0.0 422,377 + -0.4 422,377 + +1.4 422,377 + -0.5 422,378 - -0.1 422,378 - -0.9 422,378 - +1.4 422,386 + -0.7 422,387 - -0.0 422,401 + +0.8 422,401 + -0.6 422,401 + -0.8 422,401 + -0.8 422,402 - -1.6 422,471 + +1.2 422,503 + +0.7 422,503 + +0.0 422,503 + +0.4 422,503 + +0.4 422,504 - +0.1 422,504 - -0.0 422,504 - -0.2 422,547 + -1.4 422,548 - -0.3 422,762 + RPSI07_RS09820 0.53 +1.4 422,763 + RPSI07_RS09820 0.53 +0.0 423,162 + RPSI07_RS09825 0.14 -0.4 423,235 + RPSI07_RS09825 0.20 -0.3 423,236 - RPSI07_RS09825 0.20 +2.4 423,237 + RPSI07_RS09825 0.20 +0.6 423,238 - RPSI07_RS09825 0.20 -0.5 423,238 - RPSI07_RS09825 0.20 -0.5 423,238 - RPSI07_RS09825 0.20 +1.4 423,238 - RPSI07_RS09825 0.20 -0.6 423,238 - RPSI07_RS09825 0.20 -0.2
Or see this region's nucleotide sequence