Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS03640 and RPSI07_RS03645 are separated by 17 nucleotides RPSI07_RS03645 and RPSI07_RS03650 are separated by 10 nucleotides
RPSI07_RS03640: RPSI07_RS03640 - YscQ/HrcQ family type III secretion apparatus protein, at 986,999 to 988,066
_RS03640
RPSI07_RS03645: RPSI07_RS03645 - type III secretion protein HpaP, at 988,084 to 988,680
_RS03645
RPSI07_RS03650: RPSI07_RS03650 - EscV/YscV/HrcV family type III secretion system export apparatus protein, at 988,691 to 990,763
_RS03650
Position (kb) 988
989 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 987.358 kb on - strand, within RPSI07_RS03640 at 987.358 kb on - strand, within RPSI07_RS03640 at 987.358 kb on - strand, within RPSI07_RS03640 at 987.358 kb on - strand, within RPSI07_RS03640 at 987.436 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.640 kb on + strand, within RPSI07_RS03640 at 987.641 kb on - strand, within RPSI07_RS03640 at 987.641 kb on - strand, within RPSI07_RS03640 at 987.641 kb on - strand, within RPSI07_RS03640 at 988.168 kb on + strand, within RPSI07_RS03645 at 988.168 kb on + strand, within RPSI07_RS03645 at 988.168 kb on + strand, within RPSI07_RS03645 at 988.168 kb on + strand, within RPSI07_RS03645 at 988.169 kb on - strand, within RPSI07_RS03645 at 988.169 kb on - strand, within RPSI07_RS03645 at 988.169 kb on - strand, within RPSI07_RS03645 at 988.169 kb on - strand, within RPSI07_RS03645 at 988.169 kb on - strand, within RPSI07_RS03645 at 988.260 kb on + strand, within RPSI07_RS03645 at 988.260 kb on + strand, within RPSI07_RS03645 at 988.260 kb on + strand, within RPSI07_RS03645 at 988.260 kb on + strand, within RPSI07_RS03645 at 988.261 kb on - strand, within RPSI07_RS03645 at 988.261 kb on - strand, within RPSI07_RS03645 at 988.574 kb on + strand, within RPSI07_RS03645 at 988.574 kb on + strand, within RPSI07_RS03645 at 988.574 kb on + strand, within RPSI07_RS03645 at 988.574 kb on + strand, within RPSI07_RS03645 at 988.574 kb on + strand, within RPSI07_RS03645 at 988.575 kb on - strand, within RPSI07_RS03645 at 988.575 kb on - strand, within RPSI07_RS03645 at 988.753 kb on - strand at 988.753 kb on - strand at 988.797 kb on + strand at 988.797 kb on + strand at 989.055 kb on + strand, within RPSI07_RS03650 at 989.055 kb on + strand, within RPSI07_RS03650 at 989.055 kb on + strand, within RPSI07_RS03650 at 989.056 kb on - strand, within RPSI07_RS03650 at 989.224 kb on - strand, within RPSI07_RS03650 at 989.526 kb on + strand, within RPSI07_RS03650 at 989.526 kb on + strand, within RPSI07_RS03650 at 989.526 kb on + strand, within RPSI07_RS03650 at 989.526 kb on + strand, within RPSI07_RS03650 at 989.526 kb on + strand, within RPSI07_RS03650 at 989.526 kb on + strand, within RPSI07_RS03650 at 989.527 kb on - strand, within RPSI07_RS03650 at 989.527 kb on - strand, within RPSI07_RS03650 at 989.527 kb on - strand, within RPSI07_RS03650 at 989.527 kb on - strand, within RPSI07_RS03650 at 989.567 kb on - strand, within RPSI07_RS03650
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days remove 987,358 - RPSI07_RS03640 0.34 +1.8 987,358 - RPSI07_RS03640 0.34 -0.9 987,358 - RPSI07_RS03640 0.34 -1.3 987,358 - RPSI07_RS03640 0.34 -1.1 987,436 + RPSI07_RS03640 0.41 +0.2 987,640 + RPSI07_RS03640 0.60 +3.3 987,640 + RPSI07_RS03640 0.60 +0.5 987,640 + RPSI07_RS03640 0.60 -1.8 987,640 + RPSI07_RS03640 0.60 +1.6 987,640 + RPSI07_RS03640 0.60 +0.3 987,640 + RPSI07_RS03640 0.60 -1.2 987,640 + RPSI07_RS03640 0.60 +0.4 987,640 + RPSI07_RS03640 0.60 -0.6 987,640 + RPSI07_RS03640 0.60 -0.7 987,641 - RPSI07_RS03640 0.60 +0.7 987,641 - RPSI07_RS03640 0.60 -0.6 987,641 - RPSI07_RS03640 0.60 -0.8 988,168 + RPSI07_RS03645 0.14 +0.4 988,168 + RPSI07_RS03645 0.14 -0.6 988,168 + RPSI07_RS03645 0.14 -2.1 988,168 + RPSI07_RS03645 0.14 -0.8 988,169 - RPSI07_RS03645 0.14 +0.3 988,169 - RPSI07_RS03645 0.14 +1.7 988,169 - RPSI07_RS03645 0.14 -0.9 988,169 - RPSI07_RS03645 0.14 -0.6 988,169 - RPSI07_RS03645 0.14 -1.7 988,260 + RPSI07_RS03645 0.29 -0.9 988,260 + RPSI07_RS03645 0.29 -0.2 988,260 + RPSI07_RS03645 0.29 +0.3 988,260 + RPSI07_RS03645 0.29 -0.1 988,261 - RPSI07_RS03645 0.30 -0.1 988,261 - RPSI07_RS03645 0.30 -0.9 988,574 + RPSI07_RS03645 0.82 +0.7 988,574 + RPSI07_RS03645 0.82 +1.2 988,574 + RPSI07_RS03645 0.82 +3.8 988,574 + RPSI07_RS03645 0.82 +1.3 988,574 + RPSI07_RS03645 0.82 -0.2 988,575 - RPSI07_RS03645 0.82 -0.9 988,575 - RPSI07_RS03645 0.82 +1.7 988,753 - -1.1 988,753 - +0.0 988,797 + +1.7 988,797 + -1.0 989,055 + RPSI07_RS03650 0.18 -2.1 989,055 + RPSI07_RS03650 0.18 -0.2 989,055 + RPSI07_RS03650 0.18 -1.3 989,056 - RPSI07_RS03650 0.18 -0.4 989,224 - RPSI07_RS03650 0.26 +0.9 989,526 + RPSI07_RS03650 0.40 -0.0 989,526 + RPSI07_RS03650 0.40 +1.4 989,526 + RPSI07_RS03650 0.40 +0.7 989,526 + RPSI07_RS03650 0.40 +0.9 989,526 + RPSI07_RS03650 0.40 -0.3 989,526 + RPSI07_RS03650 0.40 +0.6 989,527 - RPSI07_RS03650 0.40 +1.7 989,527 - RPSI07_RS03650 0.40 +0.1 989,527 - RPSI07_RS03650 0.40 +1.2 989,527 - RPSI07_RS03650 0.40 -0.3 989,567 - RPSI07_RS03650 0.42 -2.0
Or see this region's nucleotide sequence