Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS00980

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS00975 and RPSI07_RS00980 are separated by 24 nucleotidesRPSI07_RS00980 and RPSI07_RS00985 are separated by 188 nucleotidesRPSI07_RS00985 and RPSI07_RS00990 are separated by 14 nucleotides RPSI07_RS00975: RPSI07_RS00975 - sensor domain-containing diguanylate cyclase, at 267,609 to 271,145 _RS00975 RPSI07_RS00980: RPSI07_RS00980 - PAS domain S-box protein, at 271,170 to 272,759 _RS00980 RPSI07_RS00985: RPSI07_RS00985 - hypothetical protein, at 272,948 to 273,202 _RS00985 RPSI07_RS00990: RPSI07_RS00990 - siderophore-interacting protein, at 273,217 to 274,050 _RS00990 Position (kb) 271 272 273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.291 kb on + strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.292 kb on - strand, within RPSI07_RS00975at 270.294 kb on + strand, within RPSI07_RS00975at 270.294 kb on + strand, within RPSI07_RS00975at 270.295 kb on - strand, within RPSI07_RS00975at 270.348 kb on - strand, within RPSI07_RS00975at 270.361 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.424 kb on - strand, within RPSI07_RS00975at 270.652 kb on + strand, within RPSI07_RS00975at 270.853 kb on - strandat 270.853 kb on - strandat 270.867 kb on + strandat 270.867 kb on + strandat 270.868 kb on - strandat 271.071 kb on + strandat 271.071 kb on + strandat 271.072 kb on - strandat 271.072 kb on - strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.074 kb on + strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.075 kb on - strandat 271.143 kb on + strandat 271.144 kb on - strandat 271.144 kb on - strandat 271.144 kb on - strandat 271.144 kb on - strandat 271.144 kb on - strandat 271.144 kb on - strandat 272.341 kb on + strand, within RPSI07_RS00980at 272.341 kb on + strand, within RPSI07_RS00980at 272.341 kb on + strand, within RPSI07_RS00980at 272.341 kb on + strand, within RPSI07_RS00980at 272.342 kb on - strand, within RPSI07_RS00980at 272.342 kb on - strand, within RPSI07_RS00980at 272.342 kb on - strand, within RPSI07_RS00980at 272.342 kb on - strand, within RPSI07_RS00980at 272.342 kb on - strand, within RPSI07_RS00980at 272.342 kb on - strand, within RPSI07_RS00980at 272.342 kb on - strand, within RPSI07_RS00980at 272.348 kb on + strand, within RPSI07_RS00980at 272.348 kb on + strand, within RPSI07_RS00980at 272.348 kb on + strand, within RPSI07_RS00980at 272.348 kb on + strand, within RPSI07_RS00980at 272.349 kb on - strand, within RPSI07_RS00980at 272.349 kb on - strand, within RPSI07_RS00980at 272.349 kb on - strand, within RPSI07_RS00980at 272.349 kb on - strand, within RPSI07_RS00980at 272.349 kb on - strand, within RPSI07_RS00980at 272.371 kb on + strand, within RPSI07_RS00980at 272.371 kb on + strandat 272.371 kb on + strand, within RPSI07_RS00980at 272.371 kb on + strand, within RPSI07_RS00980at 272.372 kb on - strand, within RPSI07_RS00980at 272.372 kb on - strand, within RPSI07_RS00980at 272.372 kb on - strand, within RPSI07_RS00980at 272.372 kb on - strand, within RPSI07_RS00980at 272.428 kb on + strand, within RPSI07_RS00980at 272.428 kb on + strand, within RPSI07_RS00980at 272.428 kb on + strand, within RPSI07_RS00980at 272.429 kb on - strand, within RPSI07_RS00980at 272.429 kb on - strand, within RPSI07_RS00980at 272.429 kb on - strand, within RPSI07_RS00980at 272.429 kb on - strand, within RPSI07_RS00980at 272.482 kb on + strand, within RPSI07_RS00980at 272.482 kb on + strand, within RPSI07_RS00980at 272.704 kb on + strandat 272.704 kb on + strandat 272.705 kb on - strandat 272.705 kb on - strandat 272.705 kb on - strandat 273.134 kb on + strand, within RPSI07_RS00985at 273.134 kb on + strand, within RPSI07_RS00985at 273.134 kb on + strand, within RPSI07_RS00985at 273.135 kb on - strand, within RPSI07_RS00985at 273.135 kb on - strand, within RPSI07_RS00985at 273.200 kb on + strandat 273.201 kb on - strandat 273.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
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270,291 + RPSI07_RS00975 0.76 -1.4
270,291 + RPSI07_RS00975 0.76 +0.2
270,291 + RPSI07_RS00975 0.76 -1.0
270,291 + RPSI07_RS00975 0.76 -0.5
270,291 + RPSI07_RS00975 0.76 +0.2
270,291 + RPSI07_RS00975 0.76 -0.8
270,291 + RPSI07_RS00975 0.76 +0.7
270,291 + RPSI07_RS00975 0.76 -1.6
270,291 + RPSI07_RS00975 0.76 +1.1
270,291 + RPSI07_RS00975 0.76 -1.2
270,291 + RPSI07_RS00975 0.76 -0.9
270,291 + RPSI07_RS00975 0.76 -0.5
270,292 - RPSI07_RS00975 0.76 +0.3
270,292 - RPSI07_RS00975 0.76 -0.1
270,292 - RPSI07_RS00975 0.76 -1.7
270,292 - RPSI07_RS00975 0.76 -0.9
270,292 - RPSI07_RS00975 0.76 +0.4
270,292 - RPSI07_RS00975 0.76 -0.6
270,292 - RPSI07_RS00975 0.76 -0.2
270,294 + RPSI07_RS00975 0.76 +0.1
270,294 + RPSI07_RS00975 0.76 +0.1
270,295 - RPSI07_RS00975 0.76 -1.6
270,348 - RPSI07_RS00975 0.77 -1.4
270,361 - RPSI07_RS00975 0.78 -1.3
270,424 - RPSI07_RS00975 0.80 +1.7
270,424 - RPSI07_RS00975 0.80 +1.1
270,424 - RPSI07_RS00975 0.80 +0.2
270,424 - RPSI07_RS00975 0.80 +0.7
270,424 - RPSI07_RS00975 0.80 -1.2
270,652 + RPSI07_RS00975 0.86 -1.6
270,853 - +0.1
270,853 - -0.1
270,867 + -0.6
270,867 + -0.3
270,868 - -0.6
271,071 + +0.1
271,071 + +0.7
271,072 - -0.5
271,072 - -0.2
271,074 + +0.5
271,074 + +0.7
271,074 + +1.1
271,074 + -0.4
271,074 + +0.1
271,074 + +1.6
271,074 + -1.4
271,074 + -0.1
271,074 + +0.7
271,075 - -0.1
271,075 - +2.3
271,075 - -1.3
271,075 - -0.4
271,075 - -0.1
271,075 - +0.2
271,075 - -0.1
271,075 - -0.8
271,143 + -0.6
271,144 - -0.2
271,144 - -0.6
271,144 - -1.1
271,144 - +0.5
271,144 - -0.3
271,144 - -1.4
272,341 + RPSI07_RS00980 0.74 -0.4
272,341 + RPSI07_RS00980 0.74 -1.0
272,341 + RPSI07_RS00980 0.74 -0.3
272,341 + RPSI07_RS00980 0.74 -1.7
272,342 - RPSI07_RS00980 0.74 -0.0
272,342 - RPSI07_RS00980 0.74 -1.8
272,342 - RPSI07_RS00980 0.74 +2.3
272,342 - RPSI07_RS00980 0.74 -1.2
272,342 - RPSI07_RS00980 0.74 +0.4
272,342 - RPSI07_RS00980 0.74 +2.3
272,342 - RPSI07_RS00980 0.74 -1.4
272,348 + RPSI07_RS00980 0.74 -0.2
272,348 + RPSI07_RS00980 0.74 -1.3
272,348 + RPSI07_RS00980 0.74 -0.3
272,348 + RPSI07_RS00980 0.74 +1.7
272,349 - RPSI07_RS00980 0.74 -0.9
272,349 - RPSI07_RS00980 0.74 -0.1
272,349 - RPSI07_RS00980 0.74 +0.3
272,349 - RPSI07_RS00980 0.74 +0.7
272,349 - RPSI07_RS00980 0.74 -3.8
272,371 + RPSI07_RS00980 0.76 +0.2
272,371 + -2.2
272,371 + RPSI07_RS00980 0.76 -0.3
272,371 + RPSI07_RS00980 0.76 -0.9
272,372 - RPSI07_RS00980 0.76 -0.5
272,372 - RPSI07_RS00980 0.76 +0.7
272,372 - RPSI07_RS00980 0.76 +0.5
272,372 - RPSI07_RS00980 0.76 +0.7
272,428 + RPSI07_RS00980 0.79 +1.0
272,428 + RPSI07_RS00980 0.79 -0.7
272,428 + RPSI07_RS00980 0.79 +0.1
272,429 - RPSI07_RS00980 0.79 -1.0
272,429 - RPSI07_RS00980 0.79 -1.6
272,429 - RPSI07_RS00980 0.79 +2.3
272,429 - RPSI07_RS00980 0.79 -1.4
272,482 + RPSI07_RS00980 0.83 -0.3
272,482 + RPSI07_RS00980 0.83 -0.6
272,704 + +0.5
272,704 + -0.5
272,705 - -1.1
272,705 - -0.3
272,705 - +0.7
273,134 + RPSI07_RS00985 0.73 -0.4
273,134 + RPSI07_RS00985 0.73 -0.3
273,134 + RPSI07_RS00985 0.73 -0.9
273,135 - RPSI07_RS00985 0.73 -0.3
273,135 - RPSI07_RS00985 0.73 -1.6
273,200 + -0.5
273,201 - +0.7
273,269 + -0.3

Or see this region's nucleotide sequence