Strain Fitness in Agrobacterium fabrum C58 around Atu6144

Experiment: R2A with Vancomycin 0.009 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6142 and Atu6143 overlap by 8 nucleotidesAtu6143 and Atu6144 are separated by 15 nucleotidesAtu6144 and Atu6145 overlap by 8 nucleotidesAtu6145 and Atu6146 overlap by 1 nucleotides Atu6142: Atu6142 - ABC transporter, membrane spanning protein (agrocinopine), at 161,875 to 162,801 Atu6142 Atu6143: Atu6143 - ABC transporter, membrane spanning protein (agrocinopine), at 162,794 to 163,654 Atu6143 Atu6144: Atu6144 - agrocinopine phosphodiesterase, at 163,670 to 164,470 Atu6144 Atu6145: Atu6145 - arabinose phosphate phosphatase, at 164,463 to 165,281 Atu6145 Atu6146: Atu6146 - conserved hypothetical protein, at 165,281 to 165,739 Atu6146 Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 162.711 kb on - strandat 162.726 kb on - strandat 162.771 kb on - strandat 162.851 kb on + strandat 162.861 kb on + strandat 162.861 kb on + strandat 162.869 kb on - strandat 162.921 kb on + strand, within Atu6143at 162.921 kb on + strand, within Atu6143at 162.921 kb on + strand, within Atu6143at 162.922 kb on - strand, within Atu6143at 162.946 kb on + strand, within Atu6143at 162.947 kb on - strand, within Atu6143at 162.947 kb on - strand, within Atu6143at 162.949 kb on - strand, within Atu6143at 162.953 kb on + strand, within Atu6143at 162.953 kb on + strand, within Atu6143at 162.961 kb on - strand, within Atu6143at 163.002 kb on - strand, within Atu6143at 163.007 kb on - strand, within Atu6143at 163.009 kb on + strand, within Atu6143at 163.041 kb on - strand, within Atu6143at 163.054 kb on - strand, within Atu6143at 163.054 kb on - strand, within Atu6143at 163.079 kb on + strand, within Atu6143at 163.164 kb on + strand, within Atu6143at 163.197 kb on - strand, within Atu6143at 163.219 kb on - strand, within Atu6143at 163.316 kb on + strand, within Atu6143at 163.324 kb on + strand, within Atu6143at 163.333 kb on - strand, within Atu6143at 163.353 kb on - strand, within Atu6143at 163.388 kb on + strand, within Atu6143at 163.396 kb on - strand, within Atu6143at 163.396 kb on - strand, within Atu6143at 163.458 kb on - strand, within Atu6143at 163.469 kb on - strand, within Atu6143at 163.503 kb on + strand, within Atu6143at 163.503 kb on + strand, within Atu6143at 163.508 kb on + strand, within Atu6143at 163.562 kb on + strand, within Atu6143at 163.691 kb on - strandat 163.856 kb on + strand, within Atu6144at 163.857 kb on - strand, within Atu6144at 163.864 kb on - strand, within Atu6144at 163.876 kb on + strand, within Atu6144at 163.905 kb on + strand, within Atu6144at 163.924 kb on - strand, within Atu6144at 163.942 kb on - strand, within Atu6144at 163.952 kb on - strand, within Atu6144at 163.975 kb on + strand, within Atu6144at 163.975 kb on + strand, within Atu6144at 163.975 kb on + strand, within Atu6144at 163.975 kb on + strand, within Atu6144at 163.975 kb on + strand, within Atu6144at 163.983 kb on - strand, within Atu6144at 163.983 kb on - strand, within Atu6144at 163.983 kb on - strand, within Atu6144at 163.998 kb on + strand, within Atu6144at 164.087 kb on + strand, within Atu6144at 164.090 kb on - strand, within Atu6144at 164.095 kb on - strand, within Atu6144at 164.097 kb on + strand, within Atu6144at 164.097 kb on + strand, within Atu6144at 164.097 kb on + strand, within Atu6144at 164.105 kb on - strand, within Atu6144at 164.105 kb on - strand, within Atu6144at 164.105 kb on - strand, within Atu6144at 164.105 kb on - strand, within Atu6144at 164.180 kb on + strand, within Atu6144at 164.271 kb on + strand, within Atu6144at 164.296 kb on + strand, within Atu6144at 164.353 kb on + strand, within Atu6144at 164.361 kb on - strand, within Atu6144at 164.445 kb on + strandat 164.447 kb on + strandat 164.469 kb on + strandat 164.477 kb on - strandat 164.477 kb on - strandat 164.550 kb on - strand, within Atu6145at 164.550 kb on - strand, within Atu6145at 164.569 kb on + strand, within Atu6145at 164.576 kb on - strand, within Atu6145at 164.596 kb on - strand, within Atu6145at 164.596 kb on - strand, within Atu6145at 164.725 kb on + strand, within Atu6145at 164.775 kb on + strand, within Atu6145at 164.783 kb on - strand, within Atu6145at 164.783 kb on - strand, within Atu6145at 164.788 kb on - strand, within Atu6145at 164.891 kb on + strand, within Atu6145at 164.899 kb on - strand, within Atu6145at 164.906 kb on + strand, within Atu6145at 164.932 kb on - strand, within Atu6145at 164.986 kb on + strand, within Atu6145at 164.994 kb on - strand, within Atu6145at 165.056 kb on + strand, within Atu6145at 165.062 kb on - strand, within Atu6145at 165.085 kb on - strand, within Atu6145at 165.155 kb on + strand, within Atu6145at 165.159 kb on - strand, within Atu6145at 165.163 kb on - strand, within Atu6145at 165.179 kb on + strand, within Atu6145at 165.179 kb on + strand, within Atu6145at 165.183 kb on - strand, within Atu6145at 165.187 kb on - strand, within Atu6145at 165.221 kb on - strandat 165.242 kb on + strandat 165.291 kb on + strandat 165.299 kb on - strandat 165.299 kb on - strandat 165.322 kb on + strandat 165.330 kb on - strand, within Atu6146at 165.332 kb on + strand, within Atu6146at 165.340 kb on - strand, within Atu6146at 165.366 kb on + strand, within Atu6146at 165.423 kb on + strand, within Atu6146at 165.429 kb on + strand, within Atu6146at 165.439 kb on - strand, within Atu6146at 165.449 kb on - strand, within Atu6146at 165.449 kb on - strand, within Atu6146

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
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162,711 - +0.4
162,726 - -0.2
162,771 - +0.4
162,851 + -1.9
162,861 + +0.8
162,861 + -0.1
162,869 - +0.2
162,921 + Atu6143 0.15 +0.1
162,921 + Atu6143 0.15 +0.6
162,921 + Atu6143 0.15 +1.4
162,922 - Atu6143 0.15 -0.1
162,946 + Atu6143 0.18 -0.1
162,947 - Atu6143 0.18 +0.6
162,947 - Atu6143 0.18 +2.6
162,949 - Atu6143 0.18 +0.4
162,953 + Atu6143 0.18 -0.2
162,953 + Atu6143 0.18 -0.7
162,961 - Atu6143 0.19 -0.3
163,002 - Atu6143 0.24 +0.4
163,007 - Atu6143 0.25 -0.5
163,009 + Atu6143 0.25 -1.0
163,041 - Atu6143 0.29 -2.5
163,054 - Atu6143 0.30 -0.0
163,054 - Atu6143 0.30 -0.1
163,079 + Atu6143 0.33 +0.1
163,164 + Atu6143 0.43 -0.6
163,197 - Atu6143 0.47 -0.6
163,219 - Atu6143 0.49 +0.6
163,316 + Atu6143 0.61 +0.1
163,324 + Atu6143 0.62 +0.2
163,333 - Atu6143 0.63 -1.6
163,353 - Atu6143 0.65 +0.5
163,388 + Atu6143 0.69 +0.2
163,396 - Atu6143 0.70 +1.3
163,396 - Atu6143 0.70 -0.7
163,458 - Atu6143 0.77 +0.8
163,469 - Atu6143 0.78 +0.4
163,503 + Atu6143 0.82 +0.1
163,503 + Atu6143 0.82 -0.9
163,508 + Atu6143 0.83 +0.2
163,562 + Atu6143 0.89 -1.3
163,691 - -0.2
163,856 + Atu6144 0.23 +0.0
163,857 - Atu6144 0.23 -0.5
163,864 - Atu6144 0.24 -0.1
163,876 + Atu6144 0.26 -0.2
163,905 + Atu6144 0.29 +0.3
163,924 - Atu6144 0.32 -0.3
163,942 - Atu6144 0.34 -1.9
163,952 - Atu6144 0.35 -0.4
163,975 + Atu6144 0.38 -0.1
163,975 + Atu6144 0.38 -0.5
163,975 + Atu6144 0.38 -1.4
163,975 + Atu6144 0.38 -1.2
163,975 + Atu6144 0.38 +0.5
163,983 - Atu6144 0.39 -1.1
163,983 - Atu6144 0.39 +0.6
163,983 - Atu6144 0.39 +1.1
163,998 + Atu6144 0.41 -0.1
164,087 + Atu6144 0.52 +0.4
164,090 - Atu6144 0.52 -0.4
164,095 - Atu6144 0.53 +1.8
164,097 + Atu6144 0.53 +0.2
164,097 + Atu6144 0.53 -0.3
164,097 + Atu6144 0.53 -1.2
164,105 - Atu6144 0.54 +0.2
164,105 - Atu6144 0.54 -0.6
164,105 - Atu6144 0.54 +0.1
164,105 - Atu6144 0.54 -0.0
164,180 + Atu6144 0.64 +0.4
164,271 + Atu6144 0.75 -0.4
164,296 + Atu6144 0.78 +0.2
164,353 + Atu6144 0.85 -2.0
164,361 - Atu6144 0.86 -0.2
164,445 + -0.7
164,447 + -0.9
164,469 + +0.3
164,477 - +1.3
164,477 - +0.9
164,550 - Atu6145 0.11 +0.3
164,550 - Atu6145 0.11 +0.8
164,569 + Atu6145 0.13 +0.1
164,576 - Atu6145 0.14 -0.3
164,596 - Atu6145 0.16 +0.1
164,596 - Atu6145 0.16 +0.4
164,725 + Atu6145 0.32 +1.4
164,775 + Atu6145 0.38 -0.3
164,783 - Atu6145 0.39 +0.2
164,783 - Atu6145 0.39 -0.9
164,788 - Atu6145 0.40 +0.6
164,891 + Atu6145 0.52 -0.2
164,899 - Atu6145 0.53 -0.3
164,906 + Atu6145 0.54 -0.7
164,932 - Atu6145 0.57 +0.4
164,986 + Atu6145 0.64 -0.1
164,994 - Atu6145 0.65 +0.2
165,056 + Atu6145 0.72 +0.2
165,062 - Atu6145 0.73 -0.2
165,085 - Atu6145 0.76 +1.2
165,155 + Atu6145 0.84 -0.8
165,159 - Atu6145 0.85 -0.4
165,163 - Atu6145 0.85 +0.0
165,179 + Atu6145 0.87 +0.3
165,179 + Atu6145 0.87 -0.2
165,183 - Atu6145 0.88 +1.4
165,187 - Atu6145 0.88 -0.2
165,221 - +0.5
165,242 + -0.3
165,291 + -0.9
165,299 - +0.2
165,299 - -0.5
165,322 + +0.1
165,330 - Atu6146 0.11 +0.0
165,332 + Atu6146 0.11 +0.1
165,340 - Atu6146 0.13 +0.3
165,366 + Atu6146 0.19 +0.9
165,423 + Atu6146 0.31 +0.5
165,429 + Atu6146 0.32 +0.2
165,439 - Atu6146 0.34 -0.6
165,449 - Atu6146 0.37 +1.6
165,449 - Atu6146 0.37 +0.4

Or see this region's nucleotide sequence