Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3882 and Atu3883 are separated by 81 nucleotides Atu3883 and Atu3884 are separated by 181 nucleotides Atu3884 and Atu3885 are separated by 317 nucleotides
Atu3882: Atu3882 - tRNA-Val, at 977,960 to 978,034
Atu3882
Atu3883: Atu3883 - chemotaxis response regulator, at 978,116 to 978,478
Atu3883
Atu3884: Atu3884 - hypothetical protein, at 978,660 to 979,544
Atu3884
Atu3885: Atu3885 - inositol monophosphatase, at 979,862 to 980,638
Atu3885
Position (kb) 978
979
980 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 977.726 kb on - strand at 977.872 kb on - strand at 977.892 kb on + strand at 978.113 kb on + strand at 978.113 kb on + strand at 978.113 kb on + strand at 978.575 kb on - strand at 978.577 kb on + strand at 978.597 kb on - strand at 978.653 kb on + strand at 978.689 kb on + strand at 978.697 kb on - strand at 978.711 kb on + strand at 978.736 kb on + strand at 978.755 kb on + strand, within Atu3884 at 978.811 kb on + strand, within Atu3884 at 978.851 kb on + strand, within Atu3884 at 978.860 kb on - strand, within Atu3884 at 978.893 kb on + strand, within Atu3884 at 978.906 kb on - strand, within Atu3884 at 978.941 kb on + strand, within Atu3884 at 979.032 kb on + strand, within Atu3884 at 979.037 kb on + strand, within Atu3884 at 979.079 kb on + strand, within Atu3884 at 979.079 kb on + strand, within Atu3884 at 979.091 kb on + strand, within Atu3884 at 979.118 kb on - strand, within Atu3884 at 979.143 kb on - strand, within Atu3884 at 979.286 kb on - strand, within Atu3884 at 979.316 kb on + strand, within Atu3884 at 979.391 kb on + strand, within Atu3884 at 979.397 kb on + strand, within Atu3884 at 979.617 kb on + strand at 979.631 kb on + strand at 979.688 kb on - strand at 979.778 kb on + strand at 979.786 kb on + strand at 980.033 kb on - strand, within Atu3885 at 980.042 kb on - strand, within Atu3885 at 980.169 kb on + strand, within Atu3885 at 980.177 kb on - strand, within Atu3885 at 980.202 kb on + strand, within Atu3885 at 980.215 kb on - strand, within Atu3885 at 980.334 kb on - strand, within Atu3885 at 980.334 kb on - strand, within Atu3885 at 980.427 kb on + strand, within Atu3885 at 980.435 kb on - strand, within Atu3885 at 980.437 kb on + strand, within Atu3885 at 980.482 kb on + strand, within Atu3885 at 980.541 kb on + strand, within Atu3885
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 977,726 - +0.5 977,872 - -1.7 977,892 + +0.0 978,113 + -1.2 978,113 + -0.1 978,113 + +0.3 978,575 - -0.3 978,577 + -1.6 978,597 - -0.7 978,653 + -0.7 978,689 + -0.5 978,697 - -0.1 978,711 + -0.3 978,736 + +0.1 978,755 + Atu3884 0.11 -0.1 978,811 + Atu3884 0.17 +0.3 978,851 + Atu3884 0.22 -0.8 978,860 - Atu3884 0.23 +0.2 978,893 + Atu3884 0.26 -0.1 978,906 - Atu3884 0.28 -0.3 978,941 + Atu3884 0.32 -0.4 979,032 + Atu3884 0.42 +0.5 979,037 + Atu3884 0.43 -0.6 979,079 + Atu3884 0.47 +0.5 979,079 + Atu3884 0.47 -0.6 979,091 + Atu3884 0.49 -1.0 979,118 - Atu3884 0.52 -1.2 979,143 - Atu3884 0.55 +6.0 979,286 - Atu3884 0.71 +0.3 979,316 + Atu3884 0.74 -0.4 979,391 + Atu3884 0.83 +0.1 979,397 + Atu3884 0.83 -0.5 979,617 + -1.2 979,631 + -0.5 979,688 - -0.1 979,778 + +1.0 979,786 + -1.2 980,033 - Atu3885 0.22 +1.3 980,042 - Atu3885 0.23 -0.1 980,169 + Atu3885 0.40 +1.0 980,177 - Atu3885 0.41 -0.0 980,202 + Atu3885 0.44 -0.0 980,215 - Atu3885 0.45 -0.3 980,334 - Atu3885 0.61 -0.1 980,334 - Atu3885 0.61 -0.7 980,427 + Atu3885 0.73 +0.5 980,435 - Atu3885 0.74 -0.4 980,437 + Atu3885 0.74 -0.4 980,482 + Atu3885 0.80 -0.1 980,541 + Atu3885 0.87 +0.5
Or see this region's nucleotide sequence